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The map label for this gene is dgdR [H]

Identifier: 156976758

GI number: 156976758

Start: 739537

End: 740367

Strand: Reverse

Name: dgdR [H]

Synonym: VIBHAR_05533

Alternate gene names: 156976758

Gene position: 740367-739537 (Counterclockwise)

Preceding gene: 156976761

Following gene: 156976752

Centisome position: 33.59

GC content: 47.53

Gene sequence:

>831_bases
ATGGATATCGATGCGTTGCGTAGCTTTCTTGCCTTTGTAGAAACGGGAAGTTTCACTCGTGCAGCCAAACAGATCAATCG
CACCCAATCAGCGTTTAGTGCACAAATGCGTAAGTTGGAAGACGAACTCAGTGTCAGCTTGTTTGAGAAAGAGGGTCGTA
ACCTCGTACTGAGTGAAGCGGGATTGGCACTACGCTCTCATGCAGAGCAACTAGTCAGCTTACACAATAAAGCGCTGAAA
CAGGTGAAGCGCTATGAAAATAAGCGCCCTCTTCGCTTAGGTTGCCCAGAAGACTATAACGACAATATCCTGCCTAAAGT
CATTCGTGTATTACAACAATCTGAACCCACGTGTTCGATTCAAGTCTTCAGTGAGCCAAGCATCACCTTGAGAGAAAAAC
TCGATGAAGGAAAGCTAGACGCCGCTATTGTGACAAGAGCACCGGACAGTGAAGAAGGTTACTGGCTAGCAAGCGACAAA
GGCGTGTGGATTGCTCATCCTGATTTTGACATCGAGCGCGCCCAACCTCTCCCTCTCGCCCTATTCCAAACCGACTGCAA
ATACCATGCTGCGGCCGTCGATGGATTAACCAAACGTGGTATTCCTTATCAACTACTAGCGTGTTGCAATACGGCCTCTG
CACAACGAGCAATTGTACGTTCAGGTATGGCTATCGGTGCTATGGGCAGTATTAGCGTTAGCGATGATCTCGAGATCTTA
AACGATATGCCATCGCTGCCTTCCGTGGATATTGTGCTGGTAACGGGTGTTGAGCCTCATCCAATACTGGATAAAGAATG
CTTAGCGCAATTGGTTGAGTTAATGGCTTAA

Upstream 100 bases:

>100_bases
GTGTTTTGAGTACCCATTCACAATATCTGATTGTATTTAAGGGGACTAACGGATAGTTTTGATGGAACACTTCAACAAAA
ACGATGGATGAGTTTTAGAT

Downstream 100 bases:

>100_bases
CCGGATTAGCTAGCCAATCACAAAGTTAAATTCGCCCGTTAATCGCCCGTCGAATAGTATAGTTTCAAACTGTAGAGAAT
CACGGGCTTTGCCGCCCCAC

Product: transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDIDALRSFLAFVETGSFTRAAKQINRTQSAFSAQMRKLEDELSVSLFEKEGRNLVLSEAGLALRSHAEQLVSLHNKALK
QVKRYENKRPLRLGCPEDYNDNILPKVIRVLQQSEPTCSIQVFSEPSITLREKLDEGKLDAAIVTRAPDSEEGYWLASDK
GVWIAHPDFDIERAQPLPLALFQTDCKYHAAAVDGLTKRGIPYQLLACCNTASAQRAIVRSGMAIGAMGSISVSDDLEIL
NDMPSLPSVDIVLVTGVEPHPILDKECLAQLVELMA

Sequences:

>Translated_276_residues
MDIDALRSFLAFVETGSFTRAAKQINRTQSAFSAQMRKLEDELSVSLFEKEGRNLVLSEAGLALRSHAEQLVSLHNKALK
QVKRYENKRPLRLGCPEDYNDNILPKVIRVLQQSEPTCSIQVFSEPSITLREKLDEGKLDAAIVTRAPDSEEGYWLASDK
GVWIAHPDFDIERAQPLPLALFQTDCKYHAAAVDGLTKRGIPYQLLACCNTASAQRAIVRSGMAIGAMGSISVSDDLEIL
NDMPSLPSVDIVLVTGVEPHPILDKECLAQLVELMA
>Mature_276_residues
MDIDALRSFLAFVETGSFTRAAKQINRTQSAFSAQMRKLEDELSVSLFEKEGRNLVLSEAGLALRSHAEQLVSLHNKALK
QVKRYENKRPLRLGCPEDYNDNILPKVIRVLQQSEPTCSIQVFSEPSITLREKLDEGKLDAAIVTRAPDSEEGYWLASDK
GVWIAHPDFDIERAQPLPLALFQTDCKYHAAAVDGLTKRGIPYQLLACCNTASAQRAIVRSGMAIGAMGSISVSDDLEIL
NDMPSLPSVDIVLVTGVEPHPILDKECLAQLVELMA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=26.953125, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1790399, Length=186, Percent_Identity=30.1075268817204, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=31.9444444444444, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI48994962, Length=157, Percent_Identity=32.484076433121, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788887, Length=163, Percent_Identity=29.4478527607362, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30462; Mature: 30462

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIDALRSFLAFVETGSFTRAAKQINRTQSAFSAQMRKLEDELSVSLFEKEGRNLVLSEA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GLALRSHAEQLVSLHNKALKQVKRYENKRPLRLGCPEDYNDNILPKVIRVLQQSEPTCSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
QVFSEPSITLREKLDEGKLDAAIVTRAPDSEEGYWLASDKGVWIAHPDFDIERAQPLPLA
EEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCEE
LFQTDCKYHAAAVDGLTKRGIPYQLLACCNTASAQRAIVRSGMAIGAMGSISVSDDLEIL
EECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCHHHHH
NDMPSLPSVDIVLVTGVEPHPILDKECLAQLVELMA
HCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MDIDALRSFLAFVETGSFTRAAKQINRTQSAFSAQMRKLEDELSVSLFEKEGRNLVLSEA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GLALRSHAEQLVSLHNKALKQVKRYENKRPLRLGCPEDYNDNILPKVIRVLQQSEPTCSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
QVFSEPSITLREKLDEGKLDAAIVTRAPDSEEGYWLASDKGVWIAHPDFDIERAQPLPLA
EEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCEE
LFQTDCKYHAAAVDGLTKRGIPYQLLACCNTASAQRAIVRSGMAIGAMGSISVSDDLEIL
EECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCHHHHH
NDMPSLPSVDIVLVTGVEPHPILDKECLAQLVELMA
HCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]