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The map label for this gene is yabJ [H]

Identifier: 156976725

GI number: 156976725

Start: 710000

End: 710398

Strand: Direct

Name: yabJ [H]

Synonym: VIBHAR_05500

Alternate gene names: 156976725

Gene position: 710000-710398 (Clockwise)

Preceding gene: 156976722

Following gene: 156976726

Centisome position: 32.21

GC content: 49.12

Gene sequence:

>399_bases
GTGAATACTTCTACGAAAAAATACCCAGTCAAAACGGCACTATTTGCTTCTAAAGCACCACTAGAGTTGGCCATCGTCAA
CAATGGCACGTTATACACGGCGCAAATCCCAATCGATGATACGGGCGCGGTCGTGGAAGGTGGCATCGAAGCGCAAACAC
GCCAAACCTTTAATAATCTCATTCACACCCTTGAGTGCGCGGGCGAGTCGCTTGATTCAGTTCTACAAGTGCTGATCTAC
GTGACGGATCGCGAGTATCTAAAAACGGTAAATCAAGTGTATGCGGAATACTTTGAAGCGCCTTATCCAAACCGCGCAGC
CATGGTTGTCGCAGGTCTTGCCCGTGAAGAAATGCTGGTCGAGTTTGTGGTTTACGCCTCAGCGAACCAGCCAGAGTAA

Upstream 100 bases:

>100_bases
TTCTTATCAAATGTAAAAAATTTACCGTTCGATTTATCGCCTGTCAATGTGCAGTATTTAACTATCTTGAAACAAGGTTG
TTACAAAGGTTGAAAGGCAC

Downstream 100 bases:

>100_bases
AGAACAAAAACACACAGCCAAGTTTGGCGTATTAAGTGAGATGAATGAGCTGGTGGAAGACCACTAGACGTCAGGAAGAA
CAAGGACAGAGCAATGACTT

Product: ribonuclease UK114

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MNTSTKKYPVKTALFASKAPLELAIVNNGTLYTAQIPIDDTGAVVEGGIEAQTRQTFNNLIHTLECAGESLDSVLQVLIY
VTDREYLKTVNQVYAEYFEAPYPNRAAMVVAGLAREEMLVEFVVYASANQPE

Sequences:

>Translated_132_residues
MNTSTKKYPVKTALFASKAPLELAIVNNGTLYTAQIPIDDTGAVVEGGIEAQTRQTFNNLIHTLECAGESLDSVLQVLIY
VTDREYLKTVNQVYAEYFEAPYPNRAAMVVAGLAREEMLVEFVVYASANQPE
>Mature_132_residues
MNTSTKKYPVKTALFASKAPLELAIVNNGTLYTAQIPIDDTGAVVEGGIEAQTRQTFNNLIHTLECAGESLDSVLQVLIY
VTDREYLKTVNQVYAEYFEAPYPNRAAMVVAGLAREEMLVEFVVYASANQPE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320899, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14538; Mature: 14538

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSTKKYPVKTALFASKAPLELAIVNNGTLYTAQIPIDDTGAVVEGGIEAQTRQTFNNL
CCCCCCCCCHHHHHCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCHHHHHHHHHH
IHTLECAGESLDSVLQVLIYVTDREYLKTVNQVYAEYFEAPYPNRAAMVVAGLAREEMLV
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EFVVYASANQPE
HHHHHCCCCCCC
>Mature Secondary Structure
MNTSTKKYPVKTALFASKAPLELAIVNNGTLYTAQIPIDDTGAVVEGGIEAQTRQTFNNL
CCCCCCCCCHHHHHCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCHHHHHHHHHH
IHTLECAGESLDSVLQVLIYVTDREYLKTVNQVYAEYFEAPYPNRAAMVVAGLAREEMLV
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EFVVYASANQPE
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]