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The map label for this gene is ybhD [H]

Identifier: 156976724

GI number: 156976724

Start: 708948

End: 709844

Strand: Reverse

Name: ybhD [H]

Synonym: VIBHAR_05499

Alternate gene names: 156976724

Gene position: 709844-708948 (Counterclockwise)

Preceding gene: 156976729

Following gene: 156976723

Centisome position: 32.21

GC content: 46.93

Gene sequence:

>897_bases
ATGAGTATCAAACTTCAACAATTAAAGCATTTTGTGATGGTGGTCGAGGAAGTCGGTTTTAGGGCGGCTTCACATAGAGC
AAACCGCTCTCAAGCTGCGCTGTCAACGTCGATCAAAGAACTGGAAAAAAACCTCGGTCAAACGCTGTTTGAAACGGGCA
ATAAATCTAAACTCACGCCCTTTGGTGAAATCTGCTTACCCAAGATCATCCAGTTTCTTAATATCTATCACGCACTGAAC
AACGACTTAAAAGCAGCCGCTGCTGGACAGCAAGGTCGAGTGCGAATTGCCAGTGTCCCTTCTGTTGCTGCTAAGCTCAT
TCCAAGTGTTTTGGGCGCATTTTGTGAACAATACCCTAACGTCGAGGTCAGCCTAATTGATGATAACGCAGCAGGAGTCG
AAGCCCGTCTTTTATCAGGCGAGGTCGATTTAGCGTTAGGAAACCCATCACATTTAGATGAAGGCGGTATTGAGTTTACT
CCATTGATCTCCGACCCAATTGGCGTGGTATGTTTGAAGGACAACCCTATTGCCCAACACCCCGAGGGTATTGAGTGGCA
GACCTTATTAGAACAGCCCTTTATTCGAAACGGCACGTGTACTCTACTCGATCCGACGCCTGCACGCGCGCTAAGTGAAC
AGGCTTTATATTCCGTTGAGAACATCACGTCTTTGTTCTCTGTTCTGGAGCTCGGTATTGGCGTCACTACCTTGCCTAAG
TTAGCGTTCCCGACCAACGAAACTCGACTGGTTTGGATTCCGCTGATCGATCCACCTTTGGAAAGACAGGTTGGCATCTT
TACTCTGACGGACAGAACCATCTCCCCTCAGGCAAAAGCGTTTCATGATTTGTGCATTCATTACTTGAACTACCAAGAAG
AAGTAGAATCCGCATAA

Upstream 100 bases:

>100_bases
GACAGGCGATAAATCGAACGGTAAATTTTTTACATTTGATAAGAAAAATCTATCATCTTATGAAGGTTCCAATAAATAAA
GGGATTGCAGGGGTTTCGCG

Downstream 100 bases:

>100_bases
GCATATACCCAAGTGACTTCAAGATGCAGGATTCAGAGCGTTGTCATTGATTCGAGGGCAAGGAAGACAACGCAGCGTAA
TAGCCAGCTATTTCCAAGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSIKLQQLKHFVMVVEEVGFRAASHRANRSQAALSTSIKELEKNLGQTLFETGNKSKLTPFGEICLPKIIQFLNIYHALN
NDLKAAAAGQQGRVRIASVPSVAAKLIPSVLGAFCEQYPNVEVSLIDDNAAGVEARLLSGEVDLALGNPSHLDEGGIEFT
PLISDPIGVVCLKDNPIAQHPEGIEWQTLLEQPFIRNGTCTLLDPTPARALSEQALYSVENITSLFSVLELGIGVTTLPK
LAFPTNETRLVWIPLIDPPLERQVGIFTLTDRTISPQAKAFHDLCIHYLNYQEEVESA

Sequences:

>Translated_298_residues
MSIKLQQLKHFVMVVEEVGFRAASHRANRSQAALSTSIKELEKNLGQTLFETGNKSKLTPFGEICLPKIIQFLNIYHALN
NDLKAAAAGQQGRVRIASVPSVAAKLIPSVLGAFCEQYPNVEVSLIDDNAAGVEARLLSGEVDLALGNPSHLDEGGIEFT
PLISDPIGVVCLKDNPIAQHPEGIEWQTLLEQPFIRNGTCTLLDPTPARALSEQALYSVENITSLFSVLELGIGVTTLPK
LAFPTNETRLVWIPLIDPPLERQVGIFTLTDRTISPQAKAFHDLCIHYLNYQEEVESA
>Mature_297_residues
SIKLQQLKHFVMVVEEVGFRAASHRANRSQAALSTSIKELEKNLGQTLFETGNKSKLTPFGEICLPKIIQFLNIYHALNN
DLKAAAAGQQGRVRIASVPSVAAKLIPSVLGAFCEQYPNVEVSLIDDNAAGVEARLLSGEVDLALGNPSHLDEGGIEFTP
LISDPIGVVCLKDNPIAQHPEGIEWQTLLEQPFIRNGTCTLLDPTPARALSEQALYSVENITSLFSVLELGIGVTTLPKL
AFPTNETRLVWIPLIDPPLERQVGIFTLTDRTISPQAKAFHDLCIHYLNYQEEVESA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=28.9115646258503, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=27.8350515463918, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787879, Length=307, Percent_Identity=25.7328990228013, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=25.2747252747253, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=25.7950530035336, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788887, Length=264, Percent_Identity=26.8939393939394, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081904, Length=195, Percent_Identity=27.6923076923077, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=26.4227642276423, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=24.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786508, Length=172, Percent_Identity=26.7441860465116, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32588; Mature: 32457

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLQQLKHFVMVVEEVGFRAASHRANRSQAALSTSIKELEKNLGQTLFETGNKSKLTP
CCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGEICLPKIIQFLNIYHALNNDLKAAAAGQQGRVRIASVPSVAAKLIPSVLGAFCEQYPN
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLSGEVDLALGNPSHLDEGGIEFTPLISDPIGVVCLKDNPIAQH
CEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC
PEGIEWQTLLEQPFIRNGTCTLLDPTPARALSEQALYSVENITSLFSVLELGIGVTTLPK
CCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
LAFPTNETRLVWIPLIDPPLERQVGIFTLTDRTISPQAKAFHDLCIHYLNYQEEVESA
CCCCCCCCEEEEEECCCCCCHHCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHCCC
>Mature Secondary Structure 
SIKLQQLKHFVMVVEEVGFRAASHRANRSQAALSTSIKELEKNLGQTLFETGNKSKLTP
CCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGEICLPKIIQFLNIYHALNNDLKAAAAGQQGRVRIASVPSVAAKLIPSVLGAFCEQYPN
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLSGEVDLALGNPSHLDEGGIEFTPLISDPIGVVCLKDNPIAQH
CEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC
PEGIEWQTLLEQPFIRNGTCTLLDPTPARALSEQALYSVENITSLFSVLELGIGVTTLPK
CCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
LAFPTNETRLVWIPLIDPPLERQVGIFTLTDRTISPQAKAFHDLCIHYLNYQEEVESA
CCCCCCCCEEEEEECCCCCCHHCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]