| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156976699
Identifier: 156976699
GI number: 156976699
Start: 686462
End: 687079
Strand: Direct
Name: 156976699
Synonym: VIBHAR_05474
Alternate gene names: NA
Gene position: 686462-687079 (Clockwise)
Preceding gene: 156976696
Following gene: 156976700
Centisome position: 31.15
GC content: 44.01
Gene sequence:
>618_bases ATGAAAAAGGTTTTTCTTCTTACTGCACTGGTTTCTAGTTTTGCATCTGCTAACGATATGAGTGGCTTTTATCTTGGTGC GGGCATCGGTAATACCGATTTTGATGACGCAGGCTACATGAATGATGTAAGTCACGCAATCGCTCGACACTCAGGGGCAA GCGTTCCTCTAACTTCAGATTCGGATGGCTCTGCATACAAGTTGATTGCTGGTTATCAAATCAACCGCATTGTTGCTATT GAAGCACAATACACTAAGTATGCGGATACTGATGTTAAGGTGCAAAATGTTTCGGCTTTAAAGCTAAGCCACGATACGTT TACCGTAGCCGCAAATGTAGGTTACACGTTCGACAATGGCTTACGCCCATTTGCAACGCTTGGTTTAGGTTCAATCAGCT ACGAAGTAAAAGAAAACGTCACAGGCAACAACTTTAAGGACAGCGAGAGTGGCGGCACGGTTCGTTTAGGTGTTGGCTTG GAGTATGCGCCAGTAATGCTAGGTGGTCTTGCATTCCGTGCAGGTTATGAAGTTGACCATTACACGCTAGAAACTGCATT TAAAGATTACGACCAGTCTGTTGGATCTTGGTACGTGGGTTCTACTTACAAGTTTTAA
Upstream 100 bases:
>100_bases ATAAATATAAATGTGAAAACAATTTGATTTCTGTTTAGTTATTTAAGGGGTGAGATTTTAGAGTGTGTCGACTCAAACAA CACGGCAAAGACAATTCAAA
Downstream 100 bases:
>100_bases CACCTTTTTGTCTAAAACTCATCGTACCCCCCTCTGGCAGGATAGTTGTCACTGTTAAAATTTAACCAGTTTGGGTGGTA ATGAGTGAGTTTTGAATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein A
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MKKVFLLTALVSSFASANDMSGFYLGAGIGNTDFDDAGYMNDVSHAIARHSGASVPLTSDSDGSAYKLIAGYQINRIVAI EAQYTKYADTDVKVQNVSALKLSHDTFTVAANVGYTFDNGLRPFATLGLGSISYEVKENVTGNNFKDSESGGTVRLGVGL EYAPVMLGGLAFRAGYEVDHYTLETAFKDYDQSVGSWYVGSTYKF
Sequences:
>Translated_205_residues MKKVFLLTALVSSFASANDMSGFYLGAGIGNTDFDDAGYMNDVSHAIARHSGASVPLTSDSDGSAYKLIAGYQINRIVAI EAQYTKYADTDVKVQNVSALKLSHDTFTVAANVGYTFDNGLRPFATLGLGSISYEVKENVTGNNFKDSESGGTVRLGVGL EYAPVMLGGLAFRAGYEVDHYTLETAFKDYDQSVGSWYVGSTYKF >Mature_205_residues MKKVFLLTALVSSFASANDMSGFYLGAGIGNTDFDDAGYMNDVSHAIARHSGASVPLTSDSDGSAYKLIAGYQINRIVAI EAQYTKYADTDVKVQNVSALKLSHDTFTVAANVGYTFDNGLRPFATLGLGSISYEVKENVTGNNFKDSESGGTVRLGVGL EYAPVMLGGLAFRAGYEVDHYTLETAFKDYDQSVGSWYVGSTYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22024; Mature: 22024
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVFLLTALVSSFASANDMSGFYLGAGIGNTDFDDAGYMNDVSHAIARHSGASVPLTSD CCCEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCC SDGSAYKLIAGYQINRIVAIEAQYTKYADTDVKVQNVSALKLSHDTFTVAANVGYTFDNG CCCCEEEEEECEEEEEEEEEEEECCEECCCCEEEECEEEEEEECCEEEEEEECCEEECCC LRPFATLGLGSISYEVKENVTGNNFKDSESGGTVRLGVGLEYAPVMLGGLAFRAGYEVDH CCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC YTLETAFKDYDQSVGSWYVGSTYKF EEHHHHHHHHHHHCCCEECCEEECC >Mature Secondary Structure MKKVFLLTALVSSFASANDMSGFYLGAGIGNTDFDDAGYMNDVSHAIARHSGASVPLTSD CCCEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCC SDGSAYKLIAGYQINRIVAIEAQYTKYADTDVKVQNVSALKLSHDTFTVAANVGYTFDNG CCCCEEEEEECEEEEEEEEEEEECCEECCCCEEEECEEEEEEECCEEEEEEECCEEECCC LRPFATLGLGSISYEVKENVTGNNFKDSESGGTVRLGVGLEYAPVMLGGLAFRAGYEVDH CCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC YTLETAFKDYDQSVGSWYVGSTYKF EEHHHHHHHHHHHCCCEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA