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The map label for this gene is lolC [H]

Identifier: 156976627

GI number: 156976627

Start: 624349

End: 625578

Strand: Direct

Name: lolC [H]

Synonym: VIBHAR_05401

Alternate gene names: 156976627

Gene position: 624349-625578 (Clockwise)

Preceding gene: 156976626

Following gene: 156976628

Centisome position: 28.33

GC content: 46.59

Gene sequence:

>1230_bases
ATGCTTGTGAAACTGGCTTGGCGAAACCTCTGGCGACAAAAGCGCAGGACCCTACTGACGGCGTCTGCGTTGGCATTGGT
GTTGTTTCTTTCGCTTATTACACGAGCGTTTCAAGAAGGGAGTTACACGTCCAATATTAAAAATGCCGCCAAGTTTTATA
CGGGTCTGATTCAACTGCAAAACCCTGAGTTCGGTGACTCTTCCAGCATTGATGATGTCTTGCCGCAAACCAGCACCTTC
ATTTCAGCGGCCAAAAACAATCCCAATATTGATGTGGTACTGCCGCGAGTGGAATCTTTTGCTTTAGCTGCAAAAGATGA
GCGCTCAAAGGGCGTGATGGTGATGGGCGTGGAAGCTGAAGCTGAAGATAAGTACTCCAATATCAGCGACAAATTGATTG
AGGGAAGCTACATCCAATCAGGGCAAAAATCAGTGCTGGTTGGTGGTGGTTTAGCCAATTATTTGCAACTCAAGGTTGAT
GATGAACTGGTGCTGTACGGTGCCGGTTATCGAGGGCAGACCGCGGCAGGTTTGTATCAAATCTCGGGCATTCTTCATTT
TCCTTTGCAGCAACTTGATTCTCAGTTGGTGTACATGCCGCTCGATACTGCGCAAAGCCTGTATTCATTGGATGACCAAG
TCACCGCATGGGTTTTAAATACTGAGAGTTTAAGAGACTTACCTGATACCGTTGAACAGCTTAAAGCCGAGTATGGCAAA
AATGTCGCCGTGAAAGATTGGAAAGAACTTTCGCCAGAAATGGCACAGCAAATCGCCTTAGATAAAGCGGGCGGTATTTT
CTTGATTTACATTCTCTACGGCATTGTTGGTTTTGGCTTGTTTGCGACTATCTTAATGACGACATTGGAACGCCAGCGTG
AGTTCGCTGTCATGTTGGCAACTGGAATGCTGCGTTCCAAACTTGTCCTTCTGCTCACGGTAGAGTCTCTGTTTATGTCC
GTCATTGGCGCCCTTATTGGGCTTATTGTGAGTGCTCCTGTGTTGGGGTATTTCTATTTTAATCCAATCGAAATTACCGG
CGATGCTGCCAAGCTCATGCGCGAAAGTGGTTTTGAACCTATTGTGCCCGTCTCGCTCGACCCACACTTACTGCTCAATC
AAATCGCCGTCGTGCTGTTTATTCTCTTGTTGTGTTTACTTTACCCAATGATTCGTATGCTTCGAATGCCTATTGCGGCA
GGGTTAAAAGGAGGTGCTCATGCTGGTTAA

Upstream 100 bases:

>100_bases
CTCTCAGCAACAGATGAAATCGCTGCGCGACTGAGTTTGGGTAAATGAACGGCTAAAAGAAGAAACGGATAATTAAACAT
CAACGGAAGGAAACGAATCA

Downstream 100 bases:

>100_bases
GTTGGCTTGGCGTAACTTGTGGCGTAACAAGTTGAGAACCTCAATCATGCTCGGTGCGATGGTATTTGGCTTGATGGGCG
TGGTTGCCATGATGGGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MLVKLAWRNLWRQKRRTLLTASALALVLFLSLITRAFQEGSYTSNIKNAAKFYTGLIQLQNPEFGDSSSIDDVLPQTSTF
ISAAKNNPNIDVVLPRVESFALAAKDERSKGVMVMGVEAEAEDKYSNISDKLIEGSYIQSGQKSVLVGGGLANYLQLKVD
DELVLYGAGYRGQTAAGLYQISGILHFPLQQLDSQLVYMPLDTAQSLYSLDDQVTAWVLNTESLRDLPDTVEQLKAEYGK
NVAVKDWKELSPEMAQQIALDKAGGIFLIYILYGIVGFGLFATILMTTLERQREFAVMLATGMLRSKLVLLLTVESLFMS
VIGALIGLIVSAPVLGYFYFNPIEITGDAAKLMRESGFEPIVPVSLDPHLLLNQIAVVLFILLLCLLYPMIRMLRMPIAA
GLKGGAHAG

Sequences:

>Translated_409_residues
MLVKLAWRNLWRQKRRTLLTASALALVLFLSLITRAFQEGSYTSNIKNAAKFYTGLIQLQNPEFGDSSSIDDVLPQTSTF
ISAAKNNPNIDVVLPRVESFALAAKDERSKGVMVMGVEAEAEDKYSNISDKLIEGSYIQSGQKSVLVGGGLANYLQLKVD
DELVLYGAGYRGQTAAGLYQISGILHFPLQQLDSQLVYMPLDTAQSLYSLDDQVTAWVLNTESLRDLPDTVEQLKAEYGK
NVAVKDWKELSPEMAQQIALDKAGGIFLIYILYGIVGFGLFATILMTTLERQREFAVMLATGMLRSKLVLLLTVESLFMS
VIGALIGLIVSAPVLGYFYFNPIEITGDAAKLMRESGFEPIVPVSLDPHLLLNQIAVVLFILLLCLLYPMIRMLRMPIAA
GLKGGAHAG
>Mature_409_residues
MLVKLAWRNLWRQKRRTLLTASALALVLFLSLITRAFQEGSYTSNIKNAAKFYTGLIQLQNPEFGDSSSIDDVLPQTSTF
ISAAKNNPNIDVVLPRVESFALAAKDERSKGVMVMGVEAEAEDKYSNISDKLIEGSYIQSGQKSVLVGGGLANYLQLKVD
DELVLYGAGYRGQTAAGLYQISGILHFPLQQLDSQLVYMPLDTAQSLYSLDDQVTAWVLNTESLRDLPDTVEQLKAEYGK
NVAVKDWKELSPEMAQQIALDKAGGIFLIYILYGIVGFGLFATILMTTLERQREFAVMLATGMLRSKLVLLLTVESLFMS
VIGALIGLIVSAPVLGYFYFNPIEITGDAAKLMRESGFEPIVPVSLDPHLLLNQIAVVLFILLLCLLYPMIRMLRMPIAA
GLKGGAHAG

Specific function: Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 44927; Mature: 44927

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVKLAWRNLWRQKRRTLLTASALALVLFLSLITRAFQEGSYTSNIKNAAKFYTGLIQLQ
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEC
NPEFGDSSSIDDVLPQTSTFISAAKNNPNIDVVLPRVESFALAAKDERSKGVMVMGVEAE
CCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCEEEEEECCC
AEDKYSNISDKLIEGSYIQSGQKSVLVGGGLANYLQLKVDDELVLYGAGYRGQTAAGLYQ
CHHHHHCHHHHHHCCHHHCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCCCCHHHHHH
ISGILHFPLQQLDSQLVYMPLDTAQSLYSLDDQVTAWVLNTESLRDLPDTVEQLKAEYGK
HHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHCC
NVAVKDWKELSPEMAQQIALDKAGGIFLIYILYGIVGFGLFATILMTTLERQREFAVMLA
CCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGMLRSKLVLLLTVESLFMSVIGALIGLIVSAPVLGYFYFNPIEITGDAAKLMRESGFEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHHHHHHHCCCCC
IVPVSLDPHLLLNQIAVVLFILLLCLLYPMIRMLRMPIAAGLKGGAHAG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLVKLAWRNLWRQKRRTLLTASALALVLFLSLITRAFQEGSYTSNIKNAAKFYTGLIQLQ
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEC
NPEFGDSSSIDDVLPQTSTFISAAKNNPNIDVVLPRVESFALAAKDERSKGVMVMGVEAE
CCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCEEEEEECCC
AEDKYSNISDKLIEGSYIQSGQKSVLVGGGLANYLQLKVDDELVLYGAGYRGQTAAGLYQ
CHHHHHCHHHHHHCCHHHCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCCCCHHHHHH
ISGILHFPLQQLDSQLVYMPLDTAQSLYSLDDQVTAWVLNTESLRDLPDTVEQLKAEYGK
HHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHCC
NVAVKDWKELSPEMAQQIALDKAGGIFLIYILYGIVGFGLFATILMTTLERQREFAVMLA
CCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGMLRSKLVLLLTVESLFMSVIGALIGLIVSAPVLGYFYFNPIEITGDAAKLMRESGFEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHHHHHHHCCCCC
IVPVSLDPHLLLNQIAVVLFILLLCLLYPMIRMLRMPIAAGLKGGAHAG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]