Click here to switch to the map view.

The map label for this gene is napC [H]

Identifier: 156976601

GI number: 156976601

Start: 601932

End: 602510

Strand: Reverse

Name: napC [H]

Synonym: VIBHAR_05375

Alternate gene names: 156976601

Gene position: 602510-601932 (Counterclockwise)

Preceding gene: 156976602

Following gene: 156976597

Centisome position: 27.34

GC content: 48.53

Gene sequence:

>579_bases
ATGAAAATACTTAAAGCGTTTTGGAAGAGACTGTCGAGCCCGAGCAAAGCTGCCGCTGGTGTAGTTTTGTTCCTAGGCTT
CGCTGGTGGTCTTCTGTTTTGGGGCGCATTCAATACGACTATGGAAGCGACCAACACAGAAGAGTTCTGTTCTGGCTGTC
ACGCTCCTATCGTCGCTGAAATTCAAGAAACGATTCACTACTCGAACCGCTCTGGTGTGCGTGCAATCTGTTCAGACTGC
CACGTACCACATGAATGGACCGATAAAATCGTTCGAAAAGTTCAAGCATCTAAAGAGCTGTTTGCCCACTTCGTAACGAA
GACCATCGATACACCAGAAAAGTTCCAAGCACGTCGTGAGCACCTTGCCGAACGTGAGTGGGCGCGTATGAAGAAAAACG
ACTCTCTTGAATGTCGTAACTGTCATCAGTTCGATTACATGGACTACTCTCAGCAAGGTAAACGTGCCTCAGCGCAGCAC
TCTACAGCGTTGGCGTCAGGCGACAAAACCTGTGTAGATTGTCACAAAGGTATCGCACATAAACTGCCTGACATGCACGG
CGTTGAAGGCTGGCAATAA

Upstream 100 bases:

>100_bases
TGTCACGTTCCACAAACCGATGGTAAACCATTAGTGGAAAACGAGTTTAAGGCAGTCGATTCGCTTCATTAATTGAAACG
CGAGTACTAAGAGGTTACTT

Downstream 100 bases:

>100_bases
GGAGAAATACAGACAATGAGTAATCTTGAATCCTTTATCTGGCACTTCCTTGGATACAGTGCAATGCCAGTCATTATTCT
TTCCGGCTTTGTCGGAGTAG

Product: cytochrome c-type protein NapC

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKILKAFWKRLSSPSKAAAGVVLFLGFAGGLLFWGAFNTTMEATNTEEFCSGCHAPIVAEIQETIHYSNRSGVRAICSDC
HVPHEWTDKIVRKVQASKELFAHFVTKTIDTPEKFQARREHLAEREWARMKKNDSLECRNCHQFDYMDYSQQGKRASAQH
STALASGDKTCVDCHKGIAHKLPDMHGVEGWQ

Sequences:

>Translated_192_residues
MKILKAFWKRLSSPSKAAAGVVLFLGFAGGLLFWGAFNTTMEATNTEEFCSGCHAPIVAEIQETIHYSNRSGVRAICSDC
HVPHEWTDKIVRKVQASKELFAHFVTKTIDTPEKFQARREHLAEREWARMKKNDSLECRNCHQFDYMDYSQQGKRASAQH
STALASGDKTCVDCHKGIAHKLPDMHGVEGWQ
>Mature_192_residues
MKILKAFWKRLSSPSKAAAGVVLFLGFAGGLLFWGAFNTTMEATNTEEFCSGCHAPIVAEIQETIHYSNRSGVRAICSDC
HVPHEWTDKIVRKVQASKELFAHFVTKTIDTPEKFQARREHLAEREWARMKKNDSLECRNCHQFDYMDYSQQGKRASAQH
STALASGDKTCVDCHKGIAHKLPDMHGVEGWQ

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=190, Percent_Identity=53.6842105263158, Blast_Score=222, Evalue=1e-59,
Organism=Escherichia coli, GI1787230, Length=185, Percent_Identity=42.7027027027027, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1788181, Length=148, Percent_Identity=41.2162162162162, Blast_Score=131, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 21672; Mature: 21672

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKAFWKRLSSPSKAAAGVVLFLGFAGGLLFWGAFNTTMEATNTEEFCSGCHAPIVAE
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHH
IQETIHYSNRSGVRAICSDCHVPHEWTDKIVRKVQASKELFAHFVTKTIDTPEKFQARRE
HHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HLAEREWARMKKNDSLECRNCHQFDYMDYSQQGKRASAQHSTALASGDKTCVDCHKGIAH
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
KLPDMHGVEGWQ
HCCCCCCCCCCC
>Mature Secondary Structure
MKILKAFWKRLSSPSKAAAGVVLFLGFAGGLLFWGAFNTTMEATNTEEFCSGCHAPIVAE
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHH
IQETIHYSNRSGVRAICSDCHVPHEWTDKIVRKVQASKELFAHFVTKTIDTPEKFQARRE
HHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HLAEREWARMKKNDSLECRNCHQFDYMDYSQQGKRASAQHSTALASGDKTCVDCHKGIAH
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
KLPDMHGVEGWQ
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]