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The map label for this gene is yccF [H]

Identifier: 156976510

GI number: 156976510

Start: 523509

End: 523940

Strand: Reverse

Name: yccF [H]

Synonym: VIBHAR_05283

Alternate gene names: 156976510

Gene position: 523940-523509 (Counterclockwise)

Preceding gene: 156976511

Following gene: 156976502

Centisome position: 23.77

GC content: 46.3

Gene sequence:

>432_bases
ATGAGAACACTCGGCAACATCATCTGGTTTGTATTCGGTGGCGTATTTATGGGTTTGCTATGGTGGTTCTTTGGACTACT
GGCATTCATCAGTATCATTGGTATTCCATGGGGACGTGGTTGTTTTGTAATGGGTAATTTCTCGTTCTTCCCATTCGGCA
AAGAAGCCGTTTCAAGAGATGAATTGACCAATGAAATGGACATCGGCACGAGCCCACTTGGCGTCATTGGTAATGTGATT
TGGTTTGTGTTTGCGGGTATCTGGCTGGCAATCGGTCATGTGCTTTCGGCGGTGGCATGCTTTGTTACCATTATTGGCAT
TCCATTTGCGCTTCAACACCTAAAGCTTGCCGTTATCTCTCTTGCTCCGATTGGGAAAACAGTGGTAACGACTGAAGAAG
CCGCTATGGCTCGCTACAACATCAACCGCTAA

Upstream 100 bases:

>100_bases
ATCAATGATGGCTTATTTAAGATAAAGTGCATCCATTCATCCTCCGTTAAGATTCGTGTGACATACTTAACATAATGCTA
TAAATCAAAAAGGGTTTTAA

Downstream 100 bases:

>100_bases
TACTTTAGCCCTCTGAGCAACCCGCTTGGAGGGTTATTCCTGTCAATAGTAAGCCCATGATCGCCACTGCGTATTCAATA
ATCATTGATTGCATATTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRTLGNIIWFVFGGVFMGLLWWFFGLLAFISIIGIPWGRGCFVMGNFSFFPFGKEAVSRDELTNEMDIGTSPLGVIGNVI
WFVFAGIWLAIGHVLSAVACFVTIIGIPFALQHLKLAVISLAPIGKTVVTTEEAAMARYNINR

Sequences:

>Translated_143_residues
MRTLGNIIWFVFGGVFMGLLWWFFGLLAFISIIGIPWGRGCFVMGNFSFFPFGKEAVSRDELTNEMDIGTSPLGVIGNVI
WFVFAGIWLAIGHVLSAVACFVTIIGIPFALQHLKLAVISLAPIGKTVVTTEEAAMARYNINR
>Mature_143_residues
MRTLGNIIWFVFGGVFMGLLWWFFGLLAFISIIGIPWGRGCFVMGNFSFFPFGKEAVSRDELTNEMDIGTSPLGVIGNVI
WFVFAGIWLAIGHVLSAVACFVTIIGIPFALQHLKLAVISLAPIGKTVVTTEEAAMARYNINR

Specific function: Unknown

COG id: COG3304

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787195, Length=133, Percent_Identity=35.3383458646617, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005185 [H]

Pfam domain/function: PF03733 DUF307 [H]

EC number: NA

Molecular weight: Translated: 15719; Mature: 15719

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLGNIIWFVFGGVFMGLLWWFFGLLAFISIIGIPWGRGCFVMGNFSFFPFGKEAVSRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH
ELTNEMDIGTSPLGVIGNVIWFVFAGIWLAIGHVLSAVACFVTIIGIPFALQHLKLAVIS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPIGKTVVTTEEAAMARYNINR
HCCCCCHHEEHHHHHHHHHCCCC
>Mature Secondary Structure
MRTLGNIIWFVFGGVFMGLLWWFFGLLAFISIIGIPWGRGCFVMGNFSFFPFGKEAVSRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH
ELTNEMDIGTSPLGVIGNVIWFVFAGIWLAIGHVLSAVACFVTIIGIPFALQHLKLAVIS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPIGKTVVTTEEAAMARYNINR
HCCCCCHHEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2542273; 7984428 [H]