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The map label for this gene is sigZ [H]

Identifier: 156976492

GI number: 156976492

Start: 511779

End: 512339

Strand: Reverse

Name: sigZ [H]

Synonym: VIBHAR_05265

Alternate gene names: 156976492

Gene position: 512339-511779 (Counterclockwise)

Preceding gene: 156976493

Following gene: 156976491

Centisome position: 23.25

GC content: 42.6

Gene sequence:

>561_bases
ATGAAAACTGCTAACCTCGAATCAATTTGGAGCGAATACGAACACGCTATTCATGCGTTCTTGCGCTCTAAAGTCAGCAA
TGAAGATGATGTAGACGACTTAAAGCAAGAGATTTTACTTAAAACTTATCAAAACCTTGCGGATATTCGTGATGTATCTA
GCGTCAAATCTTGGCTCTTCCAAATCGCTAATAACGCCATCATCGATTTCTACCGTAAACGTGCTCGAAATCAGCGTGAC
AATGACCTGGTTGCTGACGATCTTTGGTTTGAAGAACAAGAATCAAACCTGAAACAAGAACTGTCAAAGTGCATTGCGCC
GTTTGTGCAAGCATTACCAGATGAGCAATCGCAACTGCTCTCTTCTATAGAGCTTGAAGGCATGAGCCAGAAGAAGTTGG
CAGAAGAGCAAGGCATCAGCTACTCAACCCTCAAATCGCGCGTACAGAGAGGACGTGTCGAATTGAAAAAGCTATTTGAA
GAATGTTGCAGTTTCTCGTTCGACAAACAAGGTCGTATGACAGATTGCAACCAAAACGGTGCTTCTTGCGATAAATGTTG
A

Upstream 100 bases:

>100_bases
TTAATCAGTCAGCGTCGTGAAGGTCGTACTTTATATTGTGTTGCCGAGTATGAATGCTTAGATACGGTTATTGGTTTCTT
GCGTGACGAGTGTTGCATCA

Downstream 100 bases:

>100_bases
TCCCTCGCTGAATGCCCACCTCACAATGAATACCGATAGCTTGGCGGCTCGTCATTGAGTCGCCTATCCATGAACTCAAT
CACAGCTTTATCTCTTCGTC

Product: RNA polymerase sigma factor SigZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKTANLESIWSEYEHAIHAFLRSKVSNEDDVDDLKQEILLKTYQNLADIRDVSSVKSWLFQIANNAIIDFYRKRARNQRD
NDLVADDLWFEEQESNLKQELSKCIAPFVQALPDEQSQLLSSIELEGMSQKKLAEEQGISYSTLKSRVQRGRVELKKLFE
ECCSFSFDKQGRMTDCNQNGASCDKC

Sequences:

>Translated_186_residues
MKTANLESIWSEYEHAIHAFLRSKVSNEDDVDDLKQEILLKTYQNLADIRDVSSVKSWLFQIANNAIIDFYRKRARNQRD
NDLVADDLWFEEQESNLKQELSKCIAPFVQALPDEQSQLLSSIELEGMSQKKLAEEQGISYSTLKSRVQRGRVELKKLFE
ECCSFSFDKQGRMTDCNQNGASCDKC
>Mature_186_residues
MKTANLESIWSEYEHAIHAFLRSKVSNEDDVDDLKQEILLKTYQNLADIRDVSSVKSWLFQIANNAIIDFYRKRARNQRD
NDLVADDLWFEEQESNLKQELSKCIAPFVQALPDEQSQLLSSIELEGMSQKKLAEEQGISYSTLKSRVQRGRVELKKLFE
ECCSFSFDKQGRMTDCNQNGASCDKC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21500; Mature: 21500

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTANLESIWSEYEHAIHAFLRSKVSNEDDVDDLKQEILLKTYQNLADIRDVSSVKSWLF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIANNAIIDFYRKRARNQRDNDLVADDLWFEEQESNLKQELSKCIAPFVQALPDEQSQLL
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SSIELEGMSQKKLAEEQGISYSTLKSRVQRGRVELKKLFEECCSFSFDKQGRMTDCNQNG
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ASCDKC
CCCCCC
>Mature Secondary Structure
MKTANLESIWSEYEHAIHAFLRSKVSNEDDVDDLKQEILLKTYQNLADIRDVSSVKSWLF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIANNAIIDFYRKRARNQRDNDLVADDLWFEEQESNLKQELSKCIAPFVQALPDEQSQLL
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SSIELEGMSQKKLAEEQGISYSTLKSRVQRGRVELKKLFEECCSFSFDKQGRMTDCNQNG
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ASCDKC
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]