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The map label for this gene is yahB [C]

Identifier: 156976486

GI number: 156976486

Start: 507844

End: 508737

Strand: Direct

Name: yahB [C]

Synonym: VIBHAR_05259

Alternate gene names: 156976486

Gene position: 507844-508737 (Clockwise)

Preceding gene: 156976484

Following gene: 156976487

Centisome position: 23.04

GC content: 45.3

Gene sequence:

>894_bases
ATGCCCAGAGCCAGTTTTGACCAACTTACTGCATTTGTCGCTGTCGCGGAGCATGGATCATTTAGCCAAGCCGCAAGGGT
AATTGGGAAAGACAGAGCGACGCTACACCACCAAGTCAGCGATCTAGAAATTGATTGGGATGTGATCTTGTTTGAACGCA
AAGGAAGGACACCAGTCTTGACGGAGGTCGGAGCTACGTTACTGACCCAAGCCAAACACATTCTTTATCAAATGCAGTCT
TTAGAGCTTTCTTGTGATAGCTACTCTCAAGGGGATGTTCCGGAGATAACGATTTGCCACGACATGTCGGTACCGTGTGA
TGCCATAGCGGACATCGATCTGTCTTTGCGCAAGCAATACAAGAGTACAGCGATTCATTGGTTACATCGTAGCCGAGATG
AAGCGTTAGATATGCTTATGGCGAAACAAGCGGATTTCGCGGTGGTACTTAACAGCGGCAAAGCGTTCCCAACCGAAGGG
ATGTCGTTTATTAACTTGGGTTATCCGAAGTTTACTTTCTATGCGCATCTGAAAAGTCCGATAGCGCAGAAACCTGTGGT
GACTCTGCAGGATCTCGCGTCACATCATCAATACATTGCAGAGAATTTCAGTACCAGTACACTTGGTAATCAACAGGTGA
TGTCACCAAATATCTCCCGAATCAGCAACATTGATGTGTTGATGCGACTATTGAAAAATTATGGCTTTGCCTTGCTTCCT
CATCATTTAGTGCAAGCTCATGATGAAAAGAGCGAATTTGTCCCGTTAAACATAGACTTTATGGCGAACGAAGGTCGTGC
AGGTTATGTATTATTAAAGCGAGGCAATACGTTAAGCCCTGTACATCAAAAGCTGGTGACGTTGGTGACCGAATGGTTTG
ATAAACAGGTGTAA

Upstream 100 bases:

>100_bases
TGTAATTCTCACCATTTAATCTCAGTTATGTTGCAAACTTTGCAACAAAAGGATATCGGTTGAGCTAAGATAAACGGGTT
TATTGTTAGAGGAGCTTCCA

Downstream 100 bases:

>100_bases
AAGCCAAAACTTCCCGCTTTGGATTTGCACTGGATTAAGAAAGCTCTAATCGTAGTGATATGTCCCCATCATCGAGGATA
CCATCCTCTTGAAATCCGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; Transcriptional Regulators LysR Family; LysR-Family Transcriptional Regulator; LysR Family Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator LysR Family Protein; Transcriptional Regulator Lysr Family; LysR Family Regulatory Protein; Regulatory Protein LysR; HTH-Type Transcriptional Regulator YeeY; Transcription Regulator LysR Family; LysR-Type Regulator; Transcriptional Regulator LysR; Bacterial Regulatory Helix-Turn-Helix Protein; LysR Family Transcription Regulator Protein; Transcriptional Regulator Protein; Transcriptional Regulator Protein LysR Family; HTH-Type Transcription Regulator LysR Family

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MPRASFDQLTAFVAVAEHGSFSQAARVIGKDRATLHHQVSDLEIDWDVILFERKGRTPVLTEVGATLLTQAKHILYQMQS
LELSCDSYSQGDVPEITICHDMSVPCDAIADIDLSLRKQYKSTAIHWLHRSRDEALDMLMAKQADFAVVLNSGKAFPTEG
MSFINLGYPKFTFYAHLKSPIAQKPVVTLQDLASHHQYIAENFSTSTLGNQQVMSPNISRISNIDVLMRLLKNYGFALLP
HHLVQAHDEKSEFVPLNIDFMANEGRAGYVLLKRGNTLSPVHQKLVTLVTEWFDKQV

Sequences:

>Translated_297_residues
MPRASFDQLTAFVAVAEHGSFSQAARVIGKDRATLHHQVSDLEIDWDVILFERKGRTPVLTEVGATLLTQAKHILYQMQS
LELSCDSYSQGDVPEITICHDMSVPCDAIADIDLSLRKQYKSTAIHWLHRSRDEALDMLMAKQADFAVVLNSGKAFPTEG
MSFINLGYPKFTFYAHLKSPIAQKPVVTLQDLASHHQYIAENFSTSTLGNQQVMSPNISRISNIDVLMRLLKNYGFALLP
HHLVQAHDEKSEFVPLNIDFMANEGRAGYVLLKRGNTLSPVHQKLVTLVTEWFDKQV
>Mature_296_residues
PRASFDQLTAFVAVAEHGSFSQAARVIGKDRATLHHQVSDLEIDWDVILFERKGRTPVLTEVGATLLTQAKHILYQMQSL
ELSCDSYSQGDVPEITICHDMSVPCDAIADIDLSLRKQYKSTAIHWLHRSRDEALDMLMAKQADFAVVLNSGKAFPTEGM
SFINLGYPKFTFYAHLKSPIAQKPVVTLQDLASHHQYIAENFSTSTLGNQQVMSPNISRISNIDVLMRLLKNYGFALLPH
HLVQAHDEKSEFVPLNIDFMANEGRAGYVLLKRGNTLSPVHQKLVTLVTEWFDKQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786508, Length=308, Percent_Identity=22.4025974025974, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786713, Length=261, Percent_Identity=23.7547892720307, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33365; Mature: 33233

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRASFDQLTAFVAVAEHGSFSQAARVIGKDRATLHHQVSDLEIDWDVILFERKGRTPVL
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCEEECEEEEEEECCCCCCHH
TEVGATLLTQAKHILYQMQSLELSCDSYSQGDVPEITICHDMSVPCDAIADIDLSLRKQY
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHHHH
KSTAIHWLHRSRDEALDMLMAKQADFAVVLNSGKAFPTEGMSFINLGYPKFTFYAHLKSP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCC
IAQKPVVTLQDLASHHQYIAENFSTSTLGNQQVMSPNISRISNIDVLMRLLKNYGFALLP
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
HHLVQAHDEKSEFVPLNIDFMANEGRAGYVLLKRGNTLSPVHQKLVTLVTEWFDKQV
HHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRASFDQLTAFVAVAEHGSFSQAARVIGKDRATLHHQVSDLEIDWDVILFERKGRTPVL
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCEEECEEEEEEECCCCCCHH
TEVGATLLTQAKHILYQMQSLELSCDSYSQGDVPEITICHDMSVPCDAIADIDLSLRKQY
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHHHH
KSTAIHWLHRSRDEALDMLMAKQADFAVVLNSGKAFPTEGMSFINLGYPKFTFYAHLKSP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCC
IAQKPVVTLQDLASHHQYIAENFSTSTLGNQQVMSPNISRISNIDVLMRLLKNYGFALLP
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
HHLVQAHDEKSEFVPLNIDFMANEGRAGYVLLKRGNTLSPVHQKLVTLVTEWFDKQV
HHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA