BacMap

Definition	Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession	NC_009784
Length	2,204,018

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The map label for this gene is yqjQ [H]

Identifier: 156976483

GI number: 156976483

Start: 504752

End: 505531

Strand: Direct

Name: yqjQ [H]

Synonym: VIBHAR_05256

Alternate gene names: 156976483

Gene position: 504752-505531 (Clockwise)

Preceding gene: 156976480

Following gene: 156976484

Centisome position: 22.9

GC content: 48.46

Gene sequence:

>780_bases
ATGACAAATACAGCATTAATTACAGGCGCATCAGGTGGTATCGGTGAAGAATTAGCGCGTATTCACGCCGAGAAGGGTGG
GGACTTAGTGCTTGTTGCTCGCTCTAAAGACAAGCTAGAGGCACTGGCATCAGAGCTTCGCGAAAAACACAAGGTTCAGG
TTGCTGTGATTGCAGAGGATTTGACTCAGGCTGACTCTGCTGCACGTGTGTTTGAGCAAACCGAAGCGCAAGGCTTGCAA
ATTGATGTGCTGATTAACAATGCAGGCTTTGGTGGACACGGAAAATTCCATGAACGCGAATTGGTGGCAGACCAAGCCAT
GATGCAACTTAATATGGTGACGTTGACCAATCTGACGCACCTGTTCCTGCAAGGCATGGTGGCGCGCAATCGTGGTAAGA
TTTTAAATGTGTCATCAACGGCGTCGTTTATGCCGGGTCCACTGCAAGCGGTGTACTACGCGACCAAGGCTTATGTGACA
TCATTTACCCAAGCGATAGCGGAAGAGCTTAGAGACACCAATGTAACGGCGACAGCGTTGTGTCCGGGTGCAGTAGCGAC
AGGTTTTGTTGCTGCCGGGGATTTGCAAGGTGTGGAAGTGTTTAAAAATGCCAAGTCTCCTCGTTCGGTTGCAGAGTGTG
GTTACAATGCGATGGAACAGGGTAAGTTGGTGGCCTTCAACGAAGGTGGTTTGAAGTTCATGCTTGAATGGATTGTGCCT
TTCCTACCAAGAAAATTGGTGCTAAAAATATCGCGTCAAACCATGGAAAAAAGTGCTTAG

Upstream 100 bases:

>100_bases
CAAGTAAGATGTCACCTTTTGCCAGTGTGTGGCGCGATTGGATTGCATAAACTTTACCCATACCAACAACGACGTTAGCT
CATACTAAGAGGACAAGCAC

Downstream 100 bases:

>100_bases
GAATCAAATATGATCAAGCGAGCGAGTCAATTCACTGTGCCTCAGAGTTGGAAAGTGCTGCTTAACGATATGGATATTGA
TCCGCAACTGGTGCTGGCAT

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTNTALITGASGGIGEELARIHAEKGGDLVLVARSKDKLEALASELREKHKVQVAVIAEDLTQADSAARVFEQTEAQGLQ
IDVLINNAGFGGHGKFHERELVADQAMMQLNMVTLTNLTHLFLQGMVARNRGKILNVSSTASFMPGPLQAVYYATKAYVT
SFTQAIAEELRDTNVTATALCPGAVATGFVAAGDLQGVEVFKNAKSPRSVAECGYNAMEQGKLVAFNEGGLKFMLEWIVP
FLPRKLVLKISRQTMEKSA

Sequences:

>Translated_259_residues
MTNTALITGASGGIGEELARIHAEKGGDLVLVARSKDKLEALASELREKHKVQVAVIAEDLTQADSAARVFEQTEAQGLQ
IDVLINNAGFGGHGKFHERELVADQAMMQLNMVTLTNLTHLFLQGMVARNRGKILNVSSTASFMPGPLQAVYYATKAYVT
SFTQAIAEELRDTNVTATALCPGAVATGFVAAGDLQGVEVFKNAKSPRSVAECGYNAMEQGKLVAFNEGGLKFMLEWIVP
FLPRKLVLKISRQTMEKSA
>Mature_258_residues
TNTALITGASGGIGEELARIHAEKGGDLVLVARSKDKLEALASELREKHKVQVAVIAEDLTQADSAARVFEQTEAQGLQI
DVLINNAGFGGHGKFHERELVADQAMMQLNMVTLTNLTHLFLQGMVARNRGKILNVSSTASFMPGPLQAVYYATKAYVTS
FTQAIAEELRDTNVTATALCPGAVATGFVAAGDLQGVEVFKNAKSPRSVAECGYNAMEQGKLVAFNEGGLKFMLEWIVPF
LPRKLVLKISRQTMEKSA

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=191, Percent_Identity=36.6492146596859, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=34.1968911917098, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI226371731, Length=197, Percent_Identity=27.9187817258883, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI20149619, Length=223, Percent_Identity=30.9417040358744, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=32.2916666666667, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=30.3191489361702, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40807363, Length=252, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI38424085, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7657478, Length=189, Percent_Identity=30.6878306878307, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=166, Percent_Identity=29.5180722891566, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=208, Percent_Identity=33.6538461538462, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=31.4917127071823, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=27.1739130434783, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787335, Length=237, Percent_Identity=26.1603375527426, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788459, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789208, Length=193, Percent_Identity=27.4611398963731, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=201, Percent_Identity=31.3432835820896, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25152911, Length=190, Percent_Identity=33.1578947368421, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=30.3191489361702, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=29.9465240641711, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=31, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=239, Percent_Identity=27.1966527196653, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=31.3131313131313, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=27.4131274131274, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=28.9340101522843, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=192, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI212646214, Length=190, Percent_Identity=30, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=205, Percent_Identity=30.7317073170732, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=240, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=237, Percent_Identity=25.3164556962025, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560176, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=196, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=34.7150259067358, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6319635, Length=185, Percent_Identity=33.5135135135135, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=37.8238341968912, Blast_Score=124, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28574402, Length=209, Percent_Identity=33.9712918660287, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24584744, Length=209, Percent_Identity=33.9712918660287, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI161076933, Length=212, Percent_Identity=32.0754716981132, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24584748, Length=212, Percent_Identity=32.0754716981132, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24584752, Length=189, Percent_Identity=32.2751322751323, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI116007236, Length=208, Percent_Identity=29.8076923076923, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=31.9371727748691, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=31.8681318681319, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=182, Percent_Identity=32.4175824175824, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571526, Length=182, Percent_Identity=33.5164835164835, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21358495, Length=185, Percent_Identity=29.1891891891892, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=29.5454545454545, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=216, Percent_Identity=28.7037037037037, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221331216, Length=239, Percent_Identity=26.7782426778243, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24665247, Length=239, Percent_Identity=26.7782426778243, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28571387, Length=195, Percent_Identity=30.2564102564103, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=30.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24665243, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221331218, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=29, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 27870; Mature: 27739

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTALITGASGGIGEELARIHAEKGGDLVLVARSKDKLEALASELREKHKVQVAVIAED
CCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCEEEEEEEHH
LTQADSAARVFEQTEAQGLQIDVLINNAGFGGHGKFHERELVADQAMMQLNMVTLTNLTH
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LFLQGMVARNRGKILNVSSTASFMPGPLQAVYYATKAYVTSFTQAIAEELRDTNVTATAL
HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
CPGAVATGFVAAGDLQGVEVFKNAKSPRSVAECGYNAMEQGKLVAFNEGGLKFMLEWIVP
CCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCCCHHHCCCEEEECCCCHHHHHHHHHH
FLPRKLVLKISRQTMEKSA
HCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNTALITGASGGIGEELARIHAEKGGDLVLVARSKDKLEALASELREKHKVQVAVIAED
CCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCEEEEEEEHH
LTQADSAARVFEQTEAQGLQIDVLINNAGFGGHGKFHERELVADQAMMQLNMVTLTNLTH
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LFLQGMVARNRGKILNVSSTASFMPGPLQAVYYATKAYVTSFTQAIAEELRDTNVTATAL
HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
CPGAVATGFVAAGDLQGVEVFKNAKSPRSVAECGYNAMEQGKLVAFNEGGLKFMLEWIVP
CCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCCCHHHCCCEEEECCCCHHHHHHHHHH
FLPRKLVLKISRQTMEKSA
HCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]