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The map label for this gene is ycbX [H]

Identifier: 156976456

GI number: 156976456

Start: 482489

End: 484306

Strand: Direct

Name: ycbX [H]

Synonym: VIBHAR_05229

Alternate gene names: 156976456

Gene position: 482489-484306 (Clockwise)

Preceding gene: 156976453

Following gene: 156976458

Centisome position: 21.89

GC content: 46.81

Gene sequence:

>1818_bases
ATGTCGCAATCAGTTTTATCCCAAATTAATGTTTTTCCAGTCAAATCCGTAGGAGGCGTCGCGCTGTCTTCCGCTTGGGT
TGAAAAACAAGGATTAAGTTTTGATCGTCGATTTATGATTGCGACGTCAGATGGCTCAATGGTGACGGCCCGTAAATTCC
CACAAATGGTGACCATCAAATCAGCGTTATTGCCAGATGGTGTGGTGTTTACCAGCCTTGGGGAAGATCCATTAAAGATC
CGTTATCAAGATTTCAAAATGCAGGAAGCACCCGCGACGGTTTGGAAAGACAGTTTTACTGCATACACCACCACTGACGA
AGCAGATGATTGGTTTAGTAAAGTGTTAGGTCTTCGCGTTGAGTTACTTTTTACTGGTGAGCAATCTAATCGTGTAAGAG
AGAAGTTGGGCCACAACGTTAGCTTTGCTGATGGCTATCCGGTGCTTGTGATCAGTGAGGCGTCACTGGAAGAGCTAAAT
CGCAGAAGCTCTGAACAGCACTCGATGGACCAGTTTAGAACCAACCTTGTGGTGTCCGATACCAAGCCATTTGAAGAAGA
TTCATGGAAGCGCATTCGCATTGGTGAAGTCGAATTTAAATCAGTGATACCTTGTGAGCGTTGCATTCTAACCACCGTTA
ATACTCAACGTGGCACTTTCCGCGAAAGCAAAGAACCGTTGAAAACACTGCAAGAGTTCCGTGCTAATGAACGTGGTGGT
GTGTTCTTCGGCCAAAACCTTGTTGCCCTTAATGAAGGCATTATTCGTCAGGGAGACAAGGTAGAAGTGCTGGAATACAA
AGAAGCTGAATTCTATCCAGATAACTCTCCTAATCGCATGTCGCTCACCTGTGTCGAGCGAGAAGAGATTGCGCGCGACT
TCGTCACCTTATGGCTTGAGCCAAGCAAAGGTCAGTTACCAACATACTTGCCGGGGCAGCATTTGCCTATTGAAGTGAAA
TTAGACGGTAAGAAAGTTGGGCGTCGTTATACGCTTTCTTCTAGTCCATCTCGTCCAGGTCGTTACGCGATTTCCGTTAA
GCGTGTTTCTGGTGGTCGTGTATCTAACGCGTTACTGGATAACCTGCAAGTGGGGGATGTATTGGAAGCGGAAACGCCAG
ATGGTCAATTTCATCTAAAAGAGCACTCTGTTCAGCCTCTACTCTTGCTGTCTGCCGGTAGCGGTGTAACGCCAATGCTG
TCGATGGTTCGCTACTTGGCGGATCACAACCAACTCGATGACGTGGTGTTCTACCATCAGTGCAGTAGCGAGATTGATAT
CCCGTGTAAAGATGAGTTAAACGAACTAAAACGCCAACATCCGGGCTTAGATGTGAAGATTTGCTTAACTCAGCCTGCGG
TGGACTGGTTTGGTCTGAAAGGGCGTATTAGCTTATCCCATATCAAACAGATCAAAGATGTTGAACAACGCCAAGTGTTC
GTTTGTGGCCCTGATGGTTTTATGCAGAAAGCGAAAAACCTTCTGCTGAAGAAAGGGTTACCTGAAGATAACTACCATCA
AGAAGCTTTTGGCGTTGCGGTTGCGACGACCAAACCTGAGAAAAGTGTTGAGATTGAATTCAACGGCTTGAAGTTGGCGG
GTAACAACCAACAAACATTGCTGGAACAAGTCGAGAATGCCGGCAAGAGCATCACGAACAGCTGCCGTGCGGGCTTGTGT
GGGGCATGTAAGGTTCAATTAGAGTCTGGGCAGGTTGTTCATCCGGATGTACCTGCATTAAGCGCAGAAGAACGTGCAAT
GGGTACAGTGCTCGCGTGTTGTGCTATTCCACAAACGGACGTGACGCTAACAGATTAA

Upstream 100 bases:

>100_bases
ATTGGAGTTTTATCCCCGAGTAACCTCGAGACACTTGGGTCACCAAGCTTATTGGGATATGATAGTAGAACAATTAAAAA
GCACCTGTAGGAAGTAGGTT

Downstream 100 bases:

>100_bases
CTACCCTACATAGTAATTGCTGCTCATGACCAGCAAATAAAAACGCCGCTAACTTAGCGGCGTTTTTTCTATCTTAGAAC
GGGCTCAGAGAGGGAACACT

Product: ferredoxin/oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 604

Protein sequence:

>605_residues
MSQSVLSQINVFPVKSVGGVALSSAWVEKQGLSFDRRFMIATSDGSMVTARKFPQMVTIKSALLPDGVVFTSLGEDPLKI
RYQDFKMQEAPATVWKDSFTAYTTTDEADDWFSKVLGLRVELLFTGEQSNRVREKLGHNVSFADGYPVLVISEASLEELN
RRSSEQHSMDQFRTNLVVSDTKPFEEDSWKRIRIGEVEFKSVIPCERCILTTVNTQRGTFRESKEPLKTLQEFRANERGG
VFFGQNLVALNEGIIRQGDKVEVLEYKEAEFYPDNSPNRMSLTCVEREEIARDFVTLWLEPSKGQLPTYLPGQHLPIEVK
LDGKKVGRRYTLSSSPSRPGRYAISVKRVSGGRVSNALLDNLQVGDVLEAETPDGQFHLKEHSVQPLLLLSAGSGVTPML
SMVRYLADHNQLDDVVFYHQCSSEIDIPCKDELNELKRQHPGLDVKICLTQPAVDWFGLKGRISLSHIKQIKDVEQRQVF
VCGPDGFMQKAKNLLLKKGLPEDNYHQEAFGVAVATTKPEKSVEIEFNGLKLAGNNQQTLLEQVENAGKSITNSCRAGLC
GACKVQLESGQVVHPDVPALSAEERAMGTVLACCAIPQTDVTLTD

Sequences:

>Translated_605_residues
MSQSVLSQINVFPVKSVGGVALSSAWVEKQGLSFDRRFMIATSDGSMVTARKFPQMVTIKSALLPDGVVFTSLGEDPLKI
RYQDFKMQEAPATVWKDSFTAYTTTDEADDWFSKVLGLRVELLFTGEQSNRVREKLGHNVSFADGYPVLVISEASLEELN
RRSSEQHSMDQFRTNLVVSDTKPFEEDSWKRIRIGEVEFKSVIPCERCILTTVNTQRGTFRESKEPLKTLQEFRANERGG
VFFGQNLVALNEGIIRQGDKVEVLEYKEAEFYPDNSPNRMSLTCVEREEIARDFVTLWLEPSKGQLPTYLPGQHLPIEVK
LDGKKVGRRYTLSSSPSRPGRYAISVKRVSGGRVSNALLDNLQVGDVLEAETPDGQFHLKEHSVQPLLLLSAGSGVTPML
SMVRYLADHNQLDDVVFYHQCSSEIDIPCKDELNELKRQHPGLDVKICLTQPAVDWFGLKGRISLSHIKQIKDVEQRQVF
VCGPDGFMQKAKNLLLKKGLPEDNYHQEAFGVAVATTKPEKSVEIEFNGLKLAGNNQQTLLEQVENAGKSITNSCRAGLC
GACKVQLESGQVVHPDVPALSAEERAMGTVLACCAIPQTDVTLTD
>Mature_604_residues
SQSVLSQINVFPVKSVGGVALSSAWVEKQGLSFDRRFMIATSDGSMVTARKFPQMVTIKSALLPDGVVFTSLGEDPLKIR
YQDFKMQEAPATVWKDSFTAYTTTDEADDWFSKVLGLRVELLFTGEQSNRVREKLGHNVSFADGYPVLVISEASLEELNR
RSSEQHSMDQFRTNLVVSDTKPFEEDSWKRIRIGEVEFKSVIPCERCILTTVNTQRGTFRESKEPLKTLQEFRANERGGV
FFGQNLVALNEGIIRQGDKVEVLEYKEAEFYPDNSPNRMSLTCVEREEIARDFVTLWLEPSKGQLPTYLPGQHLPIEVKL
DGKKVGRRYTLSSSPSRPGRYAISVKRVSGGRVSNALLDNLQVGDVLEAETPDGQFHLKEHSVQPLLLLSAGSGVTPMLS
MVRYLADHNQLDDVVFYHQCSSEIDIPCKDELNELKRQHPGLDVKICLTQPAVDWFGLKGRISLSHIKQIKDVEQRQVFV
CGPDGFMQKAKNLLLKKGLPEDNYHQEAFGVAVATTKPEKSVEIEFNGLKLAGNNQQTLLEQVENAGKSITNSCRAGLCG
ACKVQLESGQVVHPDVPALSAEERAMGTVLACCAIPQTDVTLTD

Specific function: Unknown

COG id: COG3217

COG function: function code R; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MOSC domain [H]

Homologues:

Organism=Homo sapiens, GI31542713, Length=276, Percent_Identity=30.7971014492754, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI224600454, Length=287, Percent_Identity=32.7526132404181, Blast_Score=119, Evalue=9e-27,
Organism=Homo sapiens, GI157388923, Length=269, Percent_Identity=23.0483271375465, Blast_Score=83, Evalue=7e-16,
Organism=Homo sapiens, GI84875541, Length=240, Percent_Identity=27.5, Blast_Score=83, Evalue=8e-16,
Organism=Escherichia coli, GI1787179, Length=271, Percent_Identity=45.0184501845018, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1787658, Length=347, Percent_Identity=26.2247838616715, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787098, Length=299, Percent_Identity=29.4314381270903, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788903, Length=259, Percent_Identity=31.6602316602317, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1788104, Length=295, Percent_Identity=27.1186440677966, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17540702, Length=295, Percent_Identity=32.8813559322034, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17561286, Length=303, Percent_Identity=28.3828382838284, Blast_Score=102, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71990971, Length=297, Percent_Identity=27.2727272727273, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25147498, Length=238, Percent_Identity=25.2100840336134, Blast_Score=77, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17563928, Length=236, Percent_Identity=27.1186440677966, Blast_Score=72, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323510, Length=190, Percent_Identity=29.4736842105263, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323552, Length=206, Percent_Identity=25.2427184466019, Blast_Score=81, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6322146, Length=180, Percent_Identity=28.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321673, Length=280, Percent_Identity=26.4285714285714, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45550400, Length=285, Percent_Identity=27.3684210526316, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17647607, Length=248, Percent_Identity=25, Blast_Score=87, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR005302
- InterPro:   IPR005303
- InterPro:   IPR011037 [H]

Pfam domain/function: PF00111 Fer2; PF03473 MOSC; PF03476 MOSC_N [H]

EC number: NA

Molecular weight: Translated: 67363; Mature: 67232

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSVLSQINVFPVKSVGGVALSSAWVEKQGLSFDRRFMIATSDGSMVTARKFPQMVTIK
CCHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEHHHCCCCEEHH
SALLPDGVVFTSLGEDPLKIRYQDFKMQEAPATVWKDSFTAYTTTDEADDWFSKVLGLRV
HHHCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHCCEE
ELLFTGEQSNRVREKLGHNVSFADGYPVLVISEASLEELNRRSSEQHSMDQFRTNLVVSD
EEEEECCCHHHHHHHHCCCCEECCCCCEEEEECCHHHHHHHHCCHHHHHHHHHCCEEEEC
TKPFEEDSWKRIRIGEVEFKSVIPCERCILTTVNTQRGTFRESKEPLKTLQEFRANERGG
CCCCCCCCCCEEEECCEEHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
VFFGQNLVALNEGIIRQGDKVEVLEYKEAEFYPDNSPNRMSLTCVEREEIARDFVTLWLE
EEECCCEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHEEEEEEC
PSKGQLPTYLPGQHLPIEVKLDGKKVGRRYTLSSSPSRPGRYAISVKRVSGGRVSNALLD
CCCCCCCCCCCCCCCEEEEEECCHHCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHC
NLQVGDVLEAETPDGQFHLKEHSVQPLLLLSAGSGVTPMLSMVRYLADHNQLDDVVFYHQ
CCCCCCEEECCCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEE
CSSEIDIPCKDELNELKRQHPGLDVKICLTQPAVDWFGLKGRISLSHIKQIKDVEQRQVF
CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCCEEEHHHHHHHHCCCCCEEE
VCGPDGFMQKAKNLLLKKGLPEDNYHQEAFGVAVATTKPEKSVEIEFNGLKLAGNNQQTL
EECCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEECCCCCEEEEEECCEEEECCCHHHH
LEQVENAGKSITNSCRAGLCGACKVQLESGQVVHPDVPALSAEERAMGTVLACCAIPQTD
HHHHHHHCHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCC
VTLTD
CEECC
>Mature Secondary Structure 
SQSVLSQINVFPVKSVGGVALSSAWVEKQGLSFDRRFMIATSDGSMVTARKFPQMVTIK
CHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEHHHCCCCEEHH
SALLPDGVVFTSLGEDPLKIRYQDFKMQEAPATVWKDSFTAYTTTDEADDWFSKVLGLRV
HHHCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHCCEE
ELLFTGEQSNRVREKLGHNVSFADGYPVLVISEASLEELNRRSSEQHSMDQFRTNLVVSD
EEEEECCCHHHHHHHHCCCCEECCCCCEEEEECCHHHHHHHHCCHHHHHHHHHCCEEEEC
TKPFEEDSWKRIRIGEVEFKSVIPCERCILTTVNTQRGTFRESKEPLKTLQEFRANERGG
CCCCCCCCCCEEEECCEEHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
VFFGQNLVALNEGIIRQGDKVEVLEYKEAEFYPDNSPNRMSLTCVEREEIARDFVTLWLE
EEECCCEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHEEEEEEC
PSKGQLPTYLPGQHLPIEVKLDGKKVGRRYTLSSSPSRPGRYAISVKRVSGGRVSNALLD
CCCCCCCCCCCCCCCEEEEEECCHHCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHC
NLQVGDVLEAETPDGQFHLKEHSVQPLLLLSAGSGVTPMLSMVRYLADHNQLDDVVFYHQ
CCCCCCEEECCCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEE
CSSEIDIPCKDELNELKRQHPGLDVKICLTQPAVDWFGLKGRISLSHIKQIKDVEQRQVF
CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCCEEEHHHHHHHHCCCCCEEE
VCGPDGFMQKAKNLLLKKGLPEDNYHQEAFGVAVATTKPEKSVEIEFNGLKLAGNNQQTL
EECCHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEECCCCCEEEEEECCEEEECCCHHHH
LEQVENAGKSITNSCRAGLCGACKVQLESGQVVHPDVPALSAEERAMGTVLACCAIPQTD
HHHHHHHCHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCC
VTLTD
CEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]