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The map label for this gene is yeaM [H]

Identifier: 156976451

GI number: 156976451

Start: 477915

End: 478745

Strand: Direct

Name: yeaM [H]

Synonym: VIBHAR_05224

Alternate gene names: 156976451

Gene position: 477915-478745 (Clockwise)

Preceding gene: 156976447

Following gene: 156976453

Centisome position: 21.68

GC content: 45.61

Gene sequence:

>831_bases
ATGTATCTCTGGAAAGACATCGTAAGCGATAGGAAGACAAATTTGAAAAAGAGTACAAGGAATCTTCATCCATCATTATC
AATCGATAGAGCACCATCAGATGTATTTATGAATTTCGAAGCCTTTCTGTCGAACACGGAAACTCGTATACACAGCCATC
CATGGGGGCAGGTTCAACTGATCAGTGGCGGCATACTAGAGATGGATGCGGAAGACACGCGTTTCTTAGCGCCTCCGCAT
CTTGCGATCTGGGTGCCTGCTGGCATACGACACACCAGTTACAACCGTAAACCTCTGGAGTACTGCTCTTTAAACATCGA
CCCAGAGTTGACTCAGCACTTTCCATCCAAAACGAGCTTGATCAAAGTGACGCCCATTGTTTCTGCGATTGTGGAAGATT
TTCGCCAGCGCGATATTAATGTTGCTAAGAGCGAAGAGGACAAGCGCCTCGTTCAAGTCTTGCTGGATCAGTTAGCCAAA
CAGGAAGTCGAGCATCACTTTTTGCCAACTACAGACAATAAGTACTTAGAGCCAATCTTAAAAGCTGTTGAAGAAGCCCC
AACTGACGAAATCAGCTTAGGAGAATGGGCGGAGAAGGTTCATACCACCGAGCGTACTTTAGCTCGCCATTGTCAAAGTG
AATTGGGAATGAGTTTTACCGAATGGCGATTGCGAGTGCGTTACCTGCATTCGATGGAGTTGTTAAGGAAGGGGCAAACA
GTAAAAGAGGTAGCGCTAACGTTGGGTTACAACCAAGCCAGTCCGTTTATTGCCATGTTTAAGAAATACTCCGGCATTAC
ACCGGAGCAATATAAGAATCGCTTGTTATAG

Upstream 100 bases:

>100_bases
CCACCCCAAATCATGACAGTAAAAAACGGAAGCAAATAAACCATGAGAACCTCATCGCAGAATAATTAATGGCGCTAGTC
TGACAGGTCTTTATAATGAA

Downstream 100 bases:

>100_bases
CTGAGCGAGCACGTAGTCTAAGCCGCCTACTACTGCTGCAACTTGAGCGTCGTTACACTCTTCATCAGTCACTTTCGGGC
TGTCTGGGTAAACTTCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MYLWKDIVSDRKTNLKKSTRNLHPSLSIDRAPSDVFMNFEAFLSNTETRIHSHPWGQVQLISGGILEMDAEDTRFLAPPH
LAIWVPAGIRHTSYNRKPLEYCSLNIDPELTQHFPSKTSLIKVTPIVSAIVEDFRQRDINVAKSEEDKRLVQVLLDQLAK
QEVEHHFLPTTDNKYLEPILKAVEEAPTDEISLGEWAEKVHTTERTLARHCQSELGMSFTEWRLRVRYLHSMELLRKGQT
VKEVALTLGYNQASPFIAMFKKYSGITPEQYKNRLL

Sequences:

>Translated_276_residues
MYLWKDIVSDRKTNLKKSTRNLHPSLSIDRAPSDVFMNFEAFLSNTETRIHSHPWGQVQLISGGILEMDAEDTRFLAPPH
LAIWVPAGIRHTSYNRKPLEYCSLNIDPELTQHFPSKTSLIKVTPIVSAIVEDFRQRDINVAKSEEDKRLVQVLLDQLAK
QEVEHHFLPTTDNKYLEPILKAVEEAPTDEISLGEWAEKVHTTERTLARHCQSELGMSFTEWRLRVRYLHSMELLRKGQT
VKEVALTLGYNQASPFIAMFKKYSGITPEQYKNRLL
>Mature_276_residues
MYLWKDIVSDRKTNLKKSTRNLHPSLSIDRAPSDVFMNFEAFLSNTETRIHSHPWGQVQLISGGILEMDAEDTRFLAPPH
LAIWVPAGIRHTSYNRKPLEYCSLNIDPELTQHFPSKTSLIKVTPIVSAIVEDFRQRDINVAKSEEDKRLVQVLLDQLAK
QEVEHHFLPTTDNKYLEPILKAVEEAPTDEISLGEWAEKVHTTERTLARHCQSELGMSFTEWRLRVRYLHSMELLRKGQT
VKEVALTLGYNQASPFIAMFKKYSGITPEQYKNRLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=31.858407079646, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31882; Mature: 31882

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLWKDIVSDRKTNLKKSTRNLHPSLSIDRAPSDVFMNFEAFLSNTETRIHSHPWGQVQL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEE
ISGGILEMDAEDTRFLAPPHLAIWVPAGIRHTSYNRKPLEYCSLNIDPELTQHFPSKTSL
ECCCEEEECCCCCEEECCCCEEEEECCCCEECCCCCCCHHHEECCCCHHHHHHCCCCCCE
IKVTPIVSAIVEDFRQRDINVAKSEEDKRLVQVLLDQLAKQEVEHHFLPTTDNKYLEPIL
EEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
KAVEEAPTDEISLGEWAEKVHTTERTLARHCQSELGMSFTEWRLRVRYLHSMELLRKGQT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH
VKEVALTLGYNQASPFIAMFKKYSGITPEQYKNRLL
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MYLWKDIVSDRKTNLKKSTRNLHPSLSIDRAPSDVFMNFEAFLSNTETRIHSHPWGQVQL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEE
ISGGILEMDAEDTRFLAPPHLAIWVPAGIRHTSYNRKPLEYCSLNIDPELTQHFPSKTSL
ECCCEEEECCCCCEEECCCCEEEEECCCCEECCCCCCCHHHEECCCCHHHHHHCCCCCCE
IKVTPIVSAIVEDFRQRDINVAKSEEDKRLVQVLLDQLAKQEVEHHFLPTTDNKYLEPIL
EEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
KAVEEAPTDEISLGEWAEKVHTTERTLARHCQSELGMSFTEWRLRVRYLHSMELLRKGQT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH
VKEVALTLGYNQASPFIAMFKKYSGITPEQYKNRLL
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]