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The map label for this gene is yncB [H]

Identifier: 156976421

GI number: 156976421

Start: 450287

End: 451318

Strand: Reverse

Name: yncB [H]

Synonym: VIBHAR_05194

Alternate gene names: 156976421

Gene position: 451318-450287 (Counterclockwise)

Preceding gene: 156976422

Following gene: 156976420

Centisome position: 20.48

GC content: 47.58

Gene sequence:

>1032_bases
ATGACCCAAACGCTCAACCGTCAAATCGTATTGGCTAACCGCCCAAAAGGTTCGCCTGTCCCAGAGAACTTCCGTTTAGA
ACAAACTGCCATCCCTACTCCGAGTGAAGGTGAAGTGCTTTTACGTAGCGTGTACCTGTCTCTTGACCCATATATGCGCG
GCCGTATGAATGAAGGCAAATCCTACGCTGATCCAGTAGAGCTAAACGATGTGATGGTTGGCGGAACCGTTTGTCAGGTG
GTGGATTCGAAGAACTCTGACTTCCAAGCTGGCGAATGGGTGGTAGCTTACACAGGCTGGCAAGATTACGCGCTATCTAA
CGGCGAAGGTCTATTTAAATTAGGCACTAAGCCGACGCATCCTTCGTATGCCCTTGGTGTGCTTGGTATGCCTGGTTTTA
CCGCTTATGTGGGTTTATTGGAAATTAGTCAGCCTAAAGCTGGCGATACTCTAGTTGTCGCAGCTGCAACTGGTGCGGTG
GGCTCCATGGTTGGTCAAATCGGTAAGCTAAAAGGTTGCCGCGTAATCGGTGTCGCAGGCGGCGCAGAGAAGTGCCAGTA
TGCAAAAGAGACCCTTGGCTTTGATGATTGTCTTGATCACACCGCTGATGACTTTGCAGAGCAACTAGCAACAACATGCG
ACAAAGGTATCGATGTCTACTTTGAAAACGTAGGCGGAAAAGTTTTTGATGCCGTATTACCTCTATTTAACGTCGGCGCT
CGCGTGCCACTTTGTGGTTTGATTTCTCAATACAACGCGACAGCGTTACCAGAAGGTCCAGATCGTATGTCGATGCTAAT
GGGTAACATTCTGGTCAAACGCATCAAGATGCAAGGCTTCATCATTTTTGACCACTACGAGCAAAGCTACACAAACTTCG
TCAAAGATGTAAGCCAATGGCTAGCAGAAGGCAAAATCCACTATCGTGAACATCTAGTAGAAGGTTTAGAAAACGCGCCA
GAGGCATTCATCGGTCTACTGGAAGGCAAAAACTTCGGCAAGCTTGTTATTCAAACCAATCAACCTGTATAA

Upstream 100 bases:

>100_bases
AACCACACTTAATCCGCCTTATCTTTACCCAAAAAGTACGGCGGATTTTTTAGGAATCAATACTAGACGACTGGTCTAAT
ACTTAATATAGGAACTTACC

Downstream 100 bases:

>100_bases
GAAAGGATTCTTCTATGATTAAACTGCATCATTTAAATCAGTCTCGCTCAAAACGCATCATTTGGTTGTTAGAAGAATTG
GGAGTGGACTACGAGATCGT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTQTLNRQIVLANRPKGSPVPENFRLEQTAIPTPSEGEVLLRSVYLSLDPYMRGRMNEGKSYADPVELNDVMVGGTVCQV
VDSKNSDFQAGEWVVAYTGWQDYALSNGEGLFKLGTKPTHPSYALGVLGMPGFTAYVGLLEISQPKAGDTLVVAAATGAV
GSMVGQIGKLKGCRVIGVAGGAEKCQYAKETLGFDDCLDHTADDFAEQLATTCDKGIDVYFENVGGKVFDAVLPLFNVGA
RVPLCGLISQYNATALPEGPDRMSMLMGNILVKRIKMQGFIIFDHYEQSYTNFVKDVSQWLAEGKIHYREHLVEGLENAP
EAFIGLLEGKNFGKLVIQTNQPV

Sequences:

>Translated_343_residues
MTQTLNRQIVLANRPKGSPVPENFRLEQTAIPTPSEGEVLLRSVYLSLDPYMRGRMNEGKSYADPVELNDVMVGGTVCQV
VDSKNSDFQAGEWVVAYTGWQDYALSNGEGLFKLGTKPTHPSYALGVLGMPGFTAYVGLLEISQPKAGDTLVVAAATGAV
GSMVGQIGKLKGCRVIGVAGGAEKCQYAKETLGFDDCLDHTADDFAEQLATTCDKGIDVYFENVGGKVFDAVLPLFNVGA
RVPLCGLISQYNATALPEGPDRMSMLMGNILVKRIKMQGFIIFDHYEQSYTNFVKDVSQWLAEGKIHYREHLVEGLENAP
EAFIGLLEGKNFGKLVIQTNQPV
>Mature_342_residues
TQTLNRQIVLANRPKGSPVPENFRLEQTAIPTPSEGEVLLRSVYLSLDPYMRGRMNEGKSYADPVELNDVMVGGTVCQVV
DSKNSDFQAGEWVVAYTGWQDYALSNGEGLFKLGTKPTHPSYALGVLGMPGFTAYVGLLEISQPKAGDTLVVAAATGAVG
SMVGQIGKLKGCRVIGVAGGAEKCQYAKETLGFDDCLDHTADDFAEQLATTCDKGIDVYFENVGGKVFDAVLPLFNVGAR
VPLCGLISQYNATALPEGPDRMSMLMGNILVKRIKMQGFIIFDHYEQSYTNFVKDVSQWLAEGKIHYREHLVEGLENAPE
AFIGLLEGKNFGKLVIQTNQPV

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=348, Percent_Identity=38.2183908045977, Blast_Score=235, Evalue=4e-62,
Organism=Homo sapiens, GI226246680, Length=348, Percent_Identity=38.2183908045977, Blast_Score=235, Evalue=4e-62,
Organism=Homo sapiens, GI22748929, Length=348, Percent_Identity=38.2183908045977, Blast_Score=235, Evalue=4e-62,
Organism=Homo sapiens, GI226059159, Length=344, Percent_Identity=39.2441860465116, Blast_Score=234, Evalue=6e-62,
Organism=Homo sapiens, GI226059133, Length=344, Percent_Identity=39.2441860465116, Blast_Score=234, Evalue=6e-62,
Organism=Homo sapiens, GI226056130, Length=316, Percent_Identity=37.6582278481013, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI28557745, Length=342, Percent_Identity=25.7309941520468, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI194239674, Length=236, Percent_Identity=26.6949152542373, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI13236495, Length=236, Percent_Identity=26.6949152542373, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI226510941, Length=334, Percent_Identity=66.4670658682635, Blast_Score=482, Evalue=1e-137,
Organism=Caenorhabditis elegans, GI133901712, Length=355, Percent_Identity=31.830985915493, Blast_Score=175, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI133901710, Length=355, Percent_Identity=31.830985915493, Blast_Score=175, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6323504, Length=371, Percent_Identity=28.0323450134771, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37229; Mature: 37098

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTLNRQIVLANRPKGSPVPENFRLEQTAIPTPSEGEVLLRSVYLSLDPYMRGRMNEGK
CCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC
SYADPVELNDVMVGGTVCQVVDSKNSDFQAGEWVVAYTGWQDYALSNGEGLFKLGTKPTH
CCCCCCCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCEEEECCCCCC
PSYALGVLGMPGFTAYVGLLEISQPKAGDTLVVAAATGAVGSMVGQIGKLKGCRVIGVAG
CCEEEEECCCCCHHHHHHHHEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECC
GAEKCQYAKETLGFDDCLDHTADDFAEQLATTCDKGIDVYFENVGGKVFDAVLPLFNVGA
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
RVPLCGLISQYNATALPEGPDRMSMLMGNILVKRIKMQGFIIFDHYEQSYTNFVKDVSQW
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHH
LAEGKIHYREHLVEGLENAPEAFIGLLEGKNFGKLVIQTNQPV
HHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCC
>Mature Secondary Structure 
TQTLNRQIVLANRPKGSPVPENFRLEQTAIPTPSEGEVLLRSVYLSLDPYMRGRMNEGK
CCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC
SYADPVELNDVMVGGTVCQVVDSKNSDFQAGEWVVAYTGWQDYALSNGEGLFKLGTKPTH
CCCCCCCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCEEEECCCCCC
PSYALGVLGMPGFTAYVGLLEISQPKAGDTLVVAAATGAVGSMVGQIGKLKGCRVIGVAG
CCEEEEECCCCCHHHHHHHHEECCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECC
GAEKCQYAKETLGFDDCLDHTADDFAEQLATTCDKGIDVYFENVGGKVFDAVLPLFNVGA
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
RVPLCGLISQYNATALPEGPDRMSMLMGNILVKRIKMQGFIIFDHYEQSYTNFVKDVSQW
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHH
LAEGKIHYREHLVEGLENAPEAFIGLLEGKNFGKLVIQTNQPV
HHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]