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The map label for this gene is ypdC [H]

Identifier: 156976412

GI number: 156976412

Start: 442351

End: 443193

Strand: Direct

Name: ypdC [H]

Synonym: VIBHAR_05185

Alternate gene names: 156976412

Gene position: 442351-443193 (Clockwise)

Preceding gene: 156976409

Following gene: 156976415

Centisome position: 20.07

GC content: 43.06

Gene sequence:

>843_bases
ATGATTTTTCATGATTTGATTTCATCAGTATTAAACGAGCGAGAACCATTTCACAATATATGGTTTGCTGGTGATTTTCA
TACACCACCTGAATTTAGCTATCAGGTTAACTTCCCTCGATTAGAATTAGTCTTGTCTGGTGAATATATTAATGAAATGG
AAAGTCATGATCGCAAAGTGACGCATATTGTGGCGAAAATCGGTGATGCGATATTTATTCCACCTAACTGTTGGAATAAA
CCTGACTGGGATACAGATTGCTCGGTATTAAGTATTCTCTTTGGTCGCCGTCAATTGGGTTTGAGTCTTGTGTCCAAACG
TAAAGGGGAAGCGAGCTTTTACGATATCCAAAAGCACAGTATTCAAACTCGTTCTGGATTTGCCATTGATAATATCTTGG
GAGCACTGAGTTCATTGGCTCGTGAGTGCAATAAGAAACCAATGGATGAGTTGTTGCTACAAGCCTTGTTGCAATACGCT
AAGTCGATGTTAGATGCGCCTATCGAGACGCAGGCGCACAGCCGAGTGCAAGATCTGTATCAGGGTATTTGTATCTATAT
CCAAGAGAACTTCCACCGCCCAATCACACGTGACAGTATTGCGTCGAGGTTCAGCATCTCTTCTAACCATTTGTCGCGTT
TGTTCCGTCAGCAAGGTCACATGACGTTAGCCGATTACATTACGTGGGTACGGGTAGACCGCGCGAAGTTTATGCTCAAG
AAATACAACTTTAAGTTGAATGAGGTATCGGTGCGCTGTGGATTTAAAGATGTGAACTACTTCTGCCGAGTCTTTAAGAA
CCGCACGGGCAGAACGCCGACGGAATATCGCGGTTCAATCTAG

Upstream 100 bases:

>100_bases
CCTTAAAATGGAAGTGTGATTTTGCTCAATAGCACAAAAATCCAGTAGGGTGTATATCTATAGGTATAGCATCATGGATG
CGTGTTAAAGAGTACGTAAA

Downstream 100 bases:

>100_bases
AACAGAAATCAAAACAGTAAAGCCTAAGCGAGCAGCCTCGACATGGCGTACATCAGAAGCGCCTGCAAGTCGACGCTGCT
TTTTGTTAGCAGTAAACGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MIFHDLISSVLNEREPFHNIWFAGDFHTPPEFSYQVNFPRLELVLSGEYINEMESHDRKVTHIVAKIGDAIFIPPNCWNK
PDWDTDCSVLSILFGRRQLGLSLVSKRKGEASFYDIQKHSIQTRSGFAIDNILGALSSLARECNKKPMDELLLQALLQYA
KSMLDAPIETQAHSRVQDLYQGICIYIQENFHRPITRDSIASRFSISSNHLSRLFRQQGHMTLADYITWVRVDRAKFMLK
KYNFKLNEVSVRCGFKDVNYFCRVFKNRTGRTPTEYRGSI

Sequences:

>Translated_280_residues
MIFHDLISSVLNEREPFHNIWFAGDFHTPPEFSYQVNFPRLELVLSGEYINEMESHDRKVTHIVAKIGDAIFIPPNCWNK
PDWDTDCSVLSILFGRRQLGLSLVSKRKGEASFYDIQKHSIQTRSGFAIDNILGALSSLARECNKKPMDELLLQALLQYA
KSMLDAPIETQAHSRVQDLYQGICIYIQENFHRPITRDSIASRFSISSNHLSRLFRQQGHMTLADYITWVRVDRAKFMLK
KYNFKLNEVSVRCGFKDVNYFCRVFKNRTGRTPTEYRGSI
>Mature_280_residues
MIFHDLISSVLNEREPFHNIWFAGDFHTPPEFSYQVNFPRLELVLSGEYINEMESHDRKVTHIVAKIGDAIFIPPNCWNK
PDWDTDCSVLSILFGRRQLGLSLVSKRKGEASFYDIQKHSIQTRSGFAIDNILGALSSLARECNKKPMDELLLQALLQYA
KSMLDAPIETQAHSRVQDLYQGICIYIQENFHRPITRDSIASRFSISSNHLSRLFRQQGHMTLADYITWVRVDRAKFMLK
KYNFKLNEVSVRCGFKDVNYFCRVFKNRTGRTPTEYRGSI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=276, Percent_Identity=35.5072463768116, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1790391, Length=281, Percent_Identity=34.1637010676157, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI171474011, Length=84, Percent_Identity=38.0952380952381, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32522; Mature: 32522

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFHDLISSVLNEREPFHNIWFAGDFHTPPEFSYQVNFPRLELVLSGEYINEMESHDRKV
CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHH
THIVAKIGDAIFIPPNCWNKPDWDTDCSVLSILFGRRQLGLSLVSKRKGEASFYDIQKHS
HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IQTRSGFAIDNILGALSSLARECNKKPMDELLLQALLQYAKSMLDAPIETQAHSRVQDLY
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QGICIYIQENFHRPITRDSIASRFSISSNHLSRLFRQQGHMTLADYITWVRVDRAKFMLK
HHHEEEEHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KYNFKLNEVSVRCGFKDVNYFCRVFKNRTGRTPTEYRGSI
HHCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIFHDLISSVLNEREPFHNIWFAGDFHTPPEFSYQVNFPRLELVLSGEYINEMESHDRKV
CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHH
THIVAKIGDAIFIPPNCWNKPDWDTDCSVLSILFGRRQLGLSLVSKRKGEASFYDIQKHS
HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IQTRSGFAIDNILGALSSLARECNKKPMDELLLQALLQYAKSMLDAPIETQAHSRVQDLY
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QGICIYIQENFHRPITRDSIASRFSISSNHLSRLFRQQGHMTLADYITWVRVDRAKFMLK
HHHEEEEHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KYNFKLNEVSVRCGFKDVNYFCRVFKNRTGRTPTEYRGSI
HHCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]