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The map label for this gene is licC [H]

Identifier: 156976393

GI number: 156976393

Start: 419005

End: 421095

Strand: Direct

Name: licC [H]

Synonym: VIBHAR_05166

Alternate gene names: 156976393

Gene position: 419005-421095 (Clockwise)

Preceding gene: 156976392

Following gene: 156976394

Centisome position: 19.01

GC content: 45.1

Gene sequence:

>2091_bases
ATGCAAACTGGCTTTAAAATCAAATTTGCTCCTTCTCAACGGCTATTCGCATTGATGGGGCAGTGGCAGTCTGCGTCCAA
ATCCTATTTAACGGACTTGGCGTCGATCGCATTGCTACTGCTGCCTTTGATTCTCTCTAATGCGTTGGCAGTATTTTTTG
GGCACGTCTTCCGTTTTACTGGTTTAATGGATTTGTCCCAGTTGCTGTTTCACGTGTCAGATATCCTGATCAACTTGTAC
CCGAGTGCATTCTGTGTGGTGGCGGGTTATTACCTTTCCCACAAAACCAATGTGTCTAGTGCGGTGTTCATCATCTATTC
GTTGATCATGTTCTATCTGATCTCCATAGAGAATGGCAGCCTTTCACAGATGTACATGTTGCCAAATAACCCGCTGTTGG
CGCTATTGAGTGCCACAATGACGTACGTTTACTGCAGCATCTTTAAGATACGTTTGTTAGAGCCTCAAGCCCTCGATTTT
TCATCACGGCTGCTTAAGCATGTGGTGCACTTTTTCTTGTTTGTGCTTATTGCGCTTGTGATGTCCCATTTCACGGCAAT
CTTTATGGCATTGGCTGGTGGTATGGTTCGCGGACTCGGTGTTGATCCATTAACGTTCAAAGGTGGTCTTATGTACCAAA
CGGTGCTGGGCTTGCTCGGCTCGATTGGTATCAACGGACATAACTTGTTATTTGCGATTAAGCAGCAGATCTTCGCCGCA
ACCGAAGCGAATATGATGGCATGGCAAGCCGGAGGGGCGTCACTGAATGTCATCAGCCAAGGTTTTTATGATGCATTTAT
GTCGATGGGCGGCTCGGGGAACTCGATCAGCTTGCTTCTCTGTGTGTTGATGTTTGCTAAAGAGCGTAACCACTTGATGT
TGGCTTTGGCGGCAATGCCACTGGTTATTTTTAACATCAACGAAGTGTTGCTGTTTGGTTTGCCAATCATCTTCAACCCG
ATTTTGATCATCCCTTTCGTGCTGGTGCCGTTAGTGAGTTTTGTCATTACCTTCTTGTGTATTTCATCGGGTCTTGTTCC
GCCGGTTGAAAACATTGTGAACTGGATGACGCCACCACTGTTCAGTGGTTATATGGCAATGGGGAATCAAATCGAAGGCT
CGATCTTGCAAGCGCTGATCATTGTTTTGGGTATTTTCATCTATCGACCATTTTACTTGGCATACGCAGGGAAATATTCA
GCGCAGTTCCGCGCCAATACGGCTTATTCTGGGATAGAAAGCTCTATCTTTAAAACATTGCTAAGTAATGTAAAAGCATC
GAACAACTCAAGCATCAGTAAGTCGACAGCCCAGAAACGTTTAACTACGATTTTGCGCGAAGGGGAGTTAGTGATGTTCT
ATCAAAAACTGCAGTCGACGAAAAATATTAACGAGTTCTCTTATGAAGCTCTGCTGCGTTACATCGATAAAGATGGAAAG
TTATGTCCACCGACATTTGTGAGTGATTTCCAGATGCTTAACTCGATGCCATTGCTAGATAAGCTGGTGATTGAGAAAGT
CTTGGCAGACATGCAGCAAATGAACTTATCGAAAGATCGTCGTATTGCCATCAACATCGCGGTGGCGACGATTGAGCAAG
AAGAGTTTGTGCCGCATTTGTTATCGCGTTTGGCCCATTACGGTATCTCGCCAGAATGGCTGGAGATTGAGATCACGGAA
GAAGCGATTCTCAGCAACAAGGTATTCTTGATTAAAACGATGGAAGCGTTGCAAGCTCAAGGCATTCGTATTGCAATGGA
TGACTTTGGTACTGGCTATGCCTCGTTCCCGCATTTGCTCAAATACCCGTTTGATAAGATCAAACTTGACCGCTCGCTCT
TACTGGATGCCAACGATAAGAAAGGAAAGGATCTCTACGAGTTGGTAGCGAAACTGGGCCATATCACCCATTGTGAGGTG
GTGGCTGAAGGGGTTGAGACACAAGCGGAGTATGACTTTGTAAAAGCGTGTGAGGTGGATAAAGTGCAAGGGTATTTCTT
TGCTCGTCCAGCTCCGTTATTGGACATTTTGGACGAACAGCAAGAAAAGCCATTTCTATCGTCACAATTACAAAGTCGAG
TGGAAATATAG

Upstream 100 bases:

>100_bases
GCTAGTTTCCTATGGAAGCGACAGCATCGCGGTAAAGGTTGCACGTATGGCTGTTTATTAAACCGCTGAATCTCTATCAC
GTTTATCATTAAGATGCTTC

Downstream 100 bases:

>100_bases
ACTTGCTGGCGCTAATGTGCGCCTCCTTGCTTAATAAGCAAACAAAATAACAAACTACGTTGACCAAAGAAACAACGAGT
TTGAGCAGAATGGAAGGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: EIIC-Lic; PTS system lichenan-specific EIIC component [H]

Number of amino acids: Translated: 696; Mature: 696

Protein sequence:

>696_residues
MQTGFKIKFAPSQRLFALMGQWQSASKSYLTDLASIALLLLPLILSNALAVFFGHVFRFTGLMDLSQLLFHVSDILINLY
PSAFCVVAGYYLSHKTNVSSAVFIIYSLIMFYLISIENGSLSQMYMLPNNPLLALLSATMTYVYCSIFKIRLLEPQALDF
SSRLLKHVVHFFLFVLIALVMSHFTAIFMALAGGMVRGLGVDPLTFKGGLMYQTVLGLLGSIGINGHNLLFAIKQQIFAA
TEANMMAWQAGGASLNVISQGFYDAFMSMGGSGNSISLLLCVLMFAKERNHLMLALAAMPLVIFNINEVLLFGLPIIFNP
ILIIPFVLVPLVSFVITFLCISSGLVPPVENIVNWMTPPLFSGYMAMGNQIEGSILQALIIVLGIFIYRPFYLAYAGKYS
AQFRANTAYSGIESSIFKTLLSNVKASNNSSISKSTAQKRLTTILREGELVMFYQKLQSTKNINEFSYEALLRYIDKDGK
LCPPTFVSDFQMLNSMPLLDKLVIEKVLADMQQMNLSKDRRIAINIAVATIEQEEFVPHLLSRLAHYGISPEWLEIEITE
EAILSNKVFLIKTMEALQAQGIRIAMDDFGTGYASFPHLLKYPFDKIKLDRSLLLDANDKKGKDLYELVAKLGHITHCEV
VAEGVETQAEYDFVKACEVDKVQGYFFARPAPLLDILDEQQEKPFLSSQLQSRVEI

Sequences:

>Translated_696_residues
MQTGFKIKFAPSQRLFALMGQWQSASKSYLTDLASIALLLLPLILSNALAVFFGHVFRFTGLMDLSQLLFHVSDILINLY
PSAFCVVAGYYLSHKTNVSSAVFIIYSLIMFYLISIENGSLSQMYMLPNNPLLALLSATMTYVYCSIFKIRLLEPQALDF
SSRLLKHVVHFFLFVLIALVMSHFTAIFMALAGGMVRGLGVDPLTFKGGLMYQTVLGLLGSIGINGHNLLFAIKQQIFAA
TEANMMAWQAGGASLNVISQGFYDAFMSMGGSGNSISLLLCVLMFAKERNHLMLALAAMPLVIFNINEVLLFGLPIIFNP
ILIIPFVLVPLVSFVITFLCISSGLVPPVENIVNWMTPPLFSGYMAMGNQIEGSILQALIIVLGIFIYRPFYLAYAGKYS
AQFRANTAYSGIESSIFKTLLSNVKASNNSSISKSTAQKRLTTILREGELVMFYQKLQSTKNINEFSYEALLRYIDKDGK
LCPPTFVSDFQMLNSMPLLDKLVIEKVLADMQQMNLSKDRRIAINIAVATIEQEEFVPHLLSRLAHYGISPEWLEIEITE
EAILSNKVFLIKTMEALQAQGIRIAMDDFGTGYASFPHLLKYPFDKIKLDRSLLLDANDKKGKDLYELVAKLGHITHCEV
VAEGVETQAEYDFVKACEVDKVQGYFFARPAPLLDILDEQQEKPFLSSQLQSRVEI
>Mature_696_residues
MQTGFKIKFAPSQRLFALMGQWQSASKSYLTDLASIALLLLPLILSNALAVFFGHVFRFTGLMDLSQLLFHVSDILINLY
PSAFCVVAGYYLSHKTNVSSAVFIIYSLIMFYLISIENGSLSQMYMLPNNPLLALLSATMTYVYCSIFKIRLLEPQALDF
SSRLLKHVVHFFLFVLIALVMSHFTAIFMALAGGMVRGLGVDPLTFKGGLMYQTVLGLLGSIGINGHNLLFAIKQQIFAA
TEANMMAWQAGGASLNVISQGFYDAFMSMGGSGNSISLLLCVLMFAKERNHLMLALAAMPLVIFNINEVLLFGLPIIFNP
ILIIPFVLVPLVSFVITFLCISSGLVPPVENIVNWMTPPLFSGYMAMGNQIEGSILQALIIVLGIFIYRPFYLAYAGKYS
AQFRANTAYSGIESSIFKTLLSNVKASNNSSISKSTAQKRLTTILREGELVMFYQKLQSTKNINEFSYEALLRYIDKDGK
LCPPTFVSDFQMLNSMPLLDKLVIEKVLADMQQMNLSKDRRIAINIAVATIEQEEFVPHLLSRLAHYGISPEWLEIEITE
EAILSNKVFLIKTMEALQAQGIRIAMDDFGTGYASFPHLLKYPFDKIKLDRSLLLDANDKKGKDLYELVAKLGHITHCEV
VAEGVETQAEYDFVKACEVDKVQGYFFARPAPLLDILDEQQEKPFLSSQLQSRVEI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-3 domain [H]

Homologues:

Organism=Escherichia coli, GI87082096, Length=257, Percent_Identity=29.1828793774319, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=26.1410788381743, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=30.8300395256917, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87081921, Length=217, Percent_Identity=27.6497695852535, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1788032, Length=156, Percent_Identity=32.0512820512821, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787541, Length=239, Percent_Identity=27.1966527196653, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=26.7716535433071, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=26.3565891472868, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87081980, Length=236, Percent_Identity=27.1186440677966, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787055, Length=319, Percent_Identity=23.5109717868339, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1788502, Length=265, Percent_Identity=27.5471698113208, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1786507, Length=158, Percent_Identity=29.746835443038, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003352
- InterPro:   IPR004796
- InterPro:   IPR004501 [H]

Pfam domain/function: PF02378 PTS_EIIC [H]

EC number: NA

Molecular weight: Translated: 77637; Mature: 77637

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS51105 PTS_EIIC_TYPE_3 ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGFKIKFAPSQRLFALMGQWQSASKSYLTDLASIALLLLPLILSNALAVFFGHVFRFT
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMDLSQLLFHVSDILINLYPSAFCVVAGYYLSHKTNVSSAVFIIYSLIMFYLISIENGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
LSQMYMLPNNPLLALLSATMTYVYCSIFKIRLLEPQALDFSSRLLKHVVHFFLFVLIALV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
MSHFTAIFMALAGGMVRGLGVDPLTFKGGLMYQTVLGLLGSIGINGHNLLFAIKQQIFAA
HHHHHHHHHHHHCHHHHCCCCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TEANMMAWQAGGASLNVISQGFYDAFMSMGGSGNSISLLLCVLMFAKERNHLMLALAAMP
HHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHH
LVIFNINEVLLFGLPIIFNPILIIPFVLVPLVSFVITFLCISSGLVPPVENIVNWMTPPL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHH
FSGYMAMGNQIEGSILQALIIVLGIFIYRPFYLAYAGKYSAQFRANTAYSGIESSIFKTL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHH
LSNVKASNNSSISKSTAQKRLTTILREGELVMFYQKLQSTKNINEFSYEALLRYIDKDGK
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LCPPTFVSDFQMLNSMPLLDKLVIEKVLADMQQMNLSKDRRIAINIAVATIEQEEFVPHL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHH
LSRLAHYGISPEWLEIEITEEAILSNKVFLIKTMEALQAQGIRIAMDDFGTGYASFPHLL
HHHHHHCCCCCCEEEEEEEHHHHHCCCCCEEEEHHHHHHCCCEEEECCCCCCHHHCHHHH
KYPFDKIKLDRSLLLDANDKKGKDLYELVAKLGHITHCEVVAEGVETQAEYDFVKACEVD
HCCHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
KVQGYFFARPAPLLDILDEQQEKPFLSSQLQSRVEI
HHCCEEEECCCHHHHHHCCHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MQTGFKIKFAPSQRLFALMGQWQSASKSYLTDLASIALLLLPLILSNALAVFFGHVFRFT
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMDLSQLLFHVSDILINLYPSAFCVVAGYYLSHKTNVSSAVFIIYSLIMFYLISIENGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
LSQMYMLPNNPLLALLSATMTYVYCSIFKIRLLEPQALDFSSRLLKHVVHFFLFVLIALV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
MSHFTAIFMALAGGMVRGLGVDPLTFKGGLMYQTVLGLLGSIGINGHNLLFAIKQQIFAA
HHHHHHHHHHHHCHHHHCCCCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TEANMMAWQAGGASLNVISQGFYDAFMSMGGSGNSISLLLCVLMFAKERNHLMLALAAMP
HHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHH
LVIFNINEVLLFGLPIIFNPILIIPFVLVPLVSFVITFLCISSGLVPPVENIVNWMTPPL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHH
FSGYMAMGNQIEGSILQALIIVLGIFIYRPFYLAYAGKYSAQFRANTAYSGIESSIFKTL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHH
LSNVKASNNSSISKSTAQKRLTTILREGELVMFYQKLQSTKNINEFSYEALLRYIDKDGK
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LCPPTFVSDFQMLNSMPLLDKLVIEKVLADMQQMNLSKDRRIAINIAVATIEQEEFVPHL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHH
LSRLAHYGISPEWLEIEITEEAILSNKVFLIKTMEALQAQGIRIAMDDFGTGYASFPHLL
HHHHHHCCCCCCEEEEEEEHHHHHCCCCCEEEEHHHHHHCCCEEEECCCCCCHHHCHHHH
KYPFDKIKLDRSLLLDANDKKGKDLYELVAKLGHITHCEVVAEGVETQAEYDFVKACEVD
HCCHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
KVQGYFFARPAPLLDILDEQQEKPFLSSQLQSRVEI
HHCCEEEECCCHHHHHHCCHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377 [H]