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The map label for this gene is yiaV [H]

Identifier: 156976338

GI number: 156976338

Start: 347633

End: 348763

Strand: Reverse

Name: yiaV [H]

Synonym: VIBHAR_05111

Alternate gene names: 156976338

Gene position: 348763-347633 (Counterclockwise)

Preceding gene: 156976339

Following gene: 156976336

Centisome position: 15.82

GC content: 48.45

Gene sequence:

>1131_bases
ATGGATTTACTACTGGTTCTGACTTACGCCGCGCTATGTATCGCGATTTTCAAAATCTTTAAGATCCCACTGAACAAGTG
GACAGTGCCAACAGCCGTACTCGGTGGTGTAGTGTTGGTCGGTACACTTATCTTACTAATGAACTACAACCACCCGTTTA
CTCAAATTGGTAACCAAGTGTTCTCAACCACCCCTGTTGTTTCAGGCGTTCGCGGTCGAGTCATTGAAGTTCCGGTTCAA
CCAAACCAACCGCTGCAAAAAGGTGATGTACTTTTCCGTATAGACCCAATTCCATACCAAGCGGAAGTAGACAAGCTAAG
AGCAAAAGTAAAAGAAGCAAGCCAGGGCGCACTTGGTCTTGAGTCTAGCGTTCAAGAAGCAGAATCAGCGGTCATCAAAG
CGCTTGCAGAACGTGATAAAGCGCAGCGCGAATTTGATCGGTACCAACGTGGCTTCGATCGTGGCGCTTTCACCGAGCAA
CAATTAGATACTCGTCGCCAAGCGTTCAAGGCCGCACAAGCAGCACTAGAAGTGGCGCAATCAAAGCAGAAACAAGCGCA
AATCGCACTCGATTCTGAAGTCGGCGGAGAAAACACGCAAGTCGCCTCACTATTGGCCGAGTTAAGAAAAGCTGAGTTCA
ACTTAGAGCAAACCGTCGTAACCGCACCAACGGATGGCTATGTCACGCAATTGGCATTGCGTCCAGGTGTGATGGCTGTA
CCTTTGCCGCTCGCACCAGTAATGACCTTTGTCCATACCGAAGACAAGCTTTATACGGCAGCGTTTCGCCAGAACTCATT
GCAACGTCTAGAGGCTGGGTTTGAAGCGGAGTTTATGTTCCGTGCATTACCGGGCAAGGTGTTTAAAGGTCAAGTGGTCG
ATGTGTTGCCAGCCATTGGTGAGAGCCAATTCCAAGCTCGAGGCTCACTGCTTGGAACAGAAGCACTGCGCACCAGCGGT
CGCGTTTTAGTGACATTAAAAATCACGGATGACTTAGAAGATTATCATCTGCCGATGGGTACAGCGGTTGAAGTTGCCGT
TTACTCCGATAGCTTTACCCACGTATCTATCATGCGCAAAGTCCTTATTCGTATGAAGAGCTGGCAAAACTACCTATACC
TAGACCATTAA

Upstream 100 bases:

>100_bases
ATGAAGTCAATGAATTGAAAAAAGAAGTCTCTACGCTGAAAGGCGAAAAGGCAGCATCGAGCACTCCAGCACAAAAAGAA
CAAGGTAAGGAGGAACAATA

Downstream 100 bases:

>100_bases
TTCATAGGTGAAAAAACCATCACAAGGTGTAATCAGGGGCTGACAGTCAGCCCCTGTTTTCATTCTAGCCATCCAGACAG
ATAGCATTCCCACTTTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MDLLLVLTYAALCIAIFKIFKIPLNKWTVPTAVLGGVVLVGTLILLMNYNHPFTQIGNQVFSTTPVVSGVRGRVIEVPVQ
PNQPLQKGDVLFRIDPIPYQAEVDKLRAKVKEASQGALGLESSVQEAESAVIKALAERDKAQREFDRYQRGFDRGAFTEQ
QLDTRRQAFKAAQAALEVAQSKQKQAQIALDSEVGGENTQVASLLAELRKAEFNLEQTVVTAPTDGYVTQLALRPGVMAV
PLPLAPVMTFVHTEDKLYTAAFRQNSLQRLEAGFEAEFMFRALPGKVFKGQVVDVLPAIGESQFQARGSLLGTEALRTSG
RVLVTLKITDDLEDYHLPMGTAVEVAVYSDSFTHVSIMRKVLIRMKSWQNYLYLDH

Sequences:

>Translated_376_residues
MDLLLVLTYAALCIAIFKIFKIPLNKWTVPTAVLGGVVLVGTLILLMNYNHPFTQIGNQVFSTTPVVSGVRGRVIEVPVQ
PNQPLQKGDVLFRIDPIPYQAEVDKLRAKVKEASQGALGLESSVQEAESAVIKALAERDKAQREFDRYQRGFDRGAFTEQ
QLDTRRQAFKAAQAALEVAQSKQKQAQIALDSEVGGENTQVASLLAELRKAEFNLEQTVVTAPTDGYVTQLALRPGVMAV
PLPLAPVMTFVHTEDKLYTAAFRQNSLQRLEAGFEAEFMFRALPGKVFKGQVVDVLPAIGESQFQARGSLLGTEALRTSG
RVLVTLKITDDLEDYHLPMGTAVEVAVYSDSFTHVSIMRKVLIRMKSWQNYLYLDH
>Mature_376_residues
MDLLLVLTYAALCIAIFKIFKIPLNKWTVPTAVLGGVVLVGTLILLMNYNHPFTQIGNQVFSTTPVVSGVRGRVIEVPVQ
PNQPLQKGDVLFRIDPIPYQAEVDKLRAKVKEASQGALGLESSVQEAESAVIKALAERDKAQREFDRYQRGFDRGAFTEQ
QLDTRRQAFKAAQAALEVAQSKQKQAQIALDSEVGGENTQVASLLAELRKAEFNLEQTVVTAPTDGYVTQLALRPGVMAV
PLPLAPVMTFVHTEDKLYTAAFRQNSLQRLEAGFEAEFMFRALPGKVFKGQVVDVLPAIGESQFQARGSLLGTEALRTSG
RVLVTLKITDDLEDYHLPMGTAVEVAVYSDSFTHVSIMRKVLIRMKSWQNYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=48.1481481481481, Blast_Score=356, Evalue=2e-99,
Organism=Escherichia coli, GI1790024, Length=380, Percent_Identity=47.1052631578947, Blast_Score=347, Evalue=7e-97,
Organism=Escherichia coli, GI1790519, Length=248, Percent_Identity=29.4354838709677, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87081951, Length=328, Percent_Identity=25.3048780487805, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 41609; Mature: 41609

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLVLTYAALCIAIFKIFKIPLNKWTVPTAVLGGVVLVGTLILLMNYNHPFTQIGNQV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FSTTPVVSGVRGRVIEVPVQPNQPLQKGDVLFRIDPIPYQAEVDKLRAKVKEASQGALGL
HHCCCHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ESSVQEAESAVIKALAERDKAQREFDRYQRGFDRGAFTEQQLDTRRQAFKAAQAALEVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SKQKQAQIALDSEVGGENTQVASLLAELRKAEFNLEQTVVTAPTDGYVTQLALRPGVMAV
HHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHEECCCCEEE
PLPLAPVMTFVHTEDKLYTAAFRQNSLQRLEAGFEAEFMFRALPGKVFKGQVVDVLPAIG
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCC
ESQFQARGSLLGTEALRTSGRVLVTLKITDDLEDYHLPMGTAVEVAVYSDSFTHVSIMRK
CHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHCCCCCCEEEEEEECCCCHHHHHHHH
VLIRMKSWQNYLYLDH
HHHHHHHCCCCEEECC
>Mature Secondary Structure
MDLLLVLTYAALCIAIFKIFKIPLNKWTVPTAVLGGVVLVGTLILLMNYNHPFTQIGNQV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FSTTPVVSGVRGRVIEVPVQPNQPLQKGDVLFRIDPIPYQAEVDKLRAKVKEASQGALGL
HHCCCHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ESSVQEAESAVIKALAERDKAQREFDRYQRGFDRGAFTEQQLDTRRQAFKAAQAALEVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SKQKQAQIALDSEVGGENTQVASLLAELRKAEFNLEQTVVTAPTDGYVTQLALRPGVMAV
HHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHEECCCCEEE
PLPLAPVMTFVHTEDKLYTAAFRQNSLQRLEAGFEAEFMFRALPGKVFKGQVVDVLPAIG
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCC
ESQFQARGSLLGTEALRTSGRVLVTLKITDDLEDYHLPMGTAVEVAVYSDSFTHVSIMRK
CHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHCCCCCCEEEEEEECCCCHHHHHHHH
VLIRMKSWQNYLYLDH
HHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]