Definition Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession NC_009784
Length 2,204,018

Click here to switch to the map view.

The map label for this gene is 156976246

Identifier: 156976246

GI number: 156976246

Start: 270820

End: 271071

Strand: Reverse

Name: 156976246

Synonym: VIBHAR_05018

Alternate gene names: NA

Gene position: 271071-270820 (Counterclockwise)

Preceding gene: 156976247

Following gene: 156976237

Centisome position: 12.3

GC content: 46.03

Gene sequence:

>252_bases
ATGAGAGTAATTTGCCAGGAGTGTGGCGAGAAAGCCCGCATACAAAAAACAAACCGTATTTCAGCGGGTTATAGCGATTT
ATATTGTAGTTGTAGTGACCCTGAGTGCGGCCATACCTTCGTGATGAACCTTTCCTTCAGCCATACTCTTAGCCCCTCTG
CAAAAACAACTTCGCAAATGGCCTTTAGCCTGGTTAAAGCACTAGGCCCAGAACAACAGAAAGAGCTGAAGCAACAGCTC
TCGATGCTATAG

Upstream 100 bases:

>100_bases
ATAGGTCTCTCCTAGCGTAGAACAAAACAATCGAACTGTATAAATCCTCACCATAATTTAGTACCATGGGCTTATCATTT
CGATAGGTTCATAGTGTCAT

Downstream 100 bases:

>100_bases
CTTAAATTCAGGGCTATCCGCCTCATCGGCCATTTGAATGATCATTTCGATGGCTTCCACCTTATCGTTATCAAGCTTGC
CTTGATTATCTGCGACAACC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Activator Ogr/Delta; Zinc-Finger Protein; Phage Gene; Phage Protein; Bacteriophage Transcription Regulator Protein

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MRVICQECGEKARIQKTNRISAGYSDLYCSCSDPECGHTFVMNLSFSHTLSPSAKTTSQMAFSLVKALGPEQQKELKQQL
SML

Sequences:

>Translated_83_residues
MRVICQECGEKARIQKTNRISAGYSDLYCSCSDPECGHTFVMNLSFSHTLSPSAKTTSQMAFSLVKALGPEQQKELKQQL
SML
>Mature_83_residues
MRVICQECGEKARIQKTNRISAGYSDLYCSCSDPECGHTFVMNLSFSHTLSPSAKTTSQMAFSLVKALGPEQQKELKQQL
SML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9220; Mature: 9220

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
6.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVICQECGEKARIQKTNRISAGYSDLYCSCSDPECGHTFVMNLSFSHTLSPSAKTTSQM
CCCHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHH
AFSLVKALGPEQQKELKQQLSML
HHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRVICQECGEKARIQKTNRISAGYSDLYCSCSDPECGHTFVMNLSFSHTLSPSAKTTSQM
CCCHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHH
AFSLVKALGPEQQKELKQQLSML
HHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA