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The map label for this gene is xerD [H]

Identifier: 156976230

GI number: 156976230

Start: 258932

End: 259969

Strand: Reverse

Name: xerD [H]

Synonym: VIBHAR_05002

Alternate gene names: 156976230

Gene position: 259969-258932 (Counterclockwise)

Preceding gene: 156976232

Following gene: 156976223

Centisome position: 11.8

GC content: 43.45

Gene sequence:

>1038_bases
ATGTCAGTACGCAATTTGAAAGATGGCTCAACCAAACCTTGGATCTGTGAATGCTACCCAAACGGGAGAGCAGGAAAACG
CGTTCGTAAGAAGTTCGCTACAAAAGGCGAAGCTAAAGCCTTTGAGCTTCACACAATGAAAGAGATTGACGATAAGCCCT
GGATGGGTATTAAACCGGATAACCGAAGAATGAGTGAGCTTTTGGAAAATTGGTGGACTATCCATGGCCATACTTTAAAG
TCAGGCAAGCAAGCCAAAGATCTCATATCCAAAACAATTGAAGAGTTAGGTAACCCAATTGCCTGCCAGTTTAAAGAACG
AGACTACCTGGCGTATCGAGCAGCTCGAACCCCCTATCGGGGCAAGAATAAATCCATCGAGATATCTCCAACCACACACA
ACCTTGAACTGATTTATCTAAAGGGCATGTTCAAGAAGCTGATTAAGTACAATCAGTGGAAATATCCCAACCCGCTTGAA
GCAATCGAGCCTATCAAAACCAGTGAGAAGCATCTTGCCTATCTAACCAAGCCACAAATCGACGAGTTCTTTGATGAACT
GCAGAACTGTAAGCGAGTTATCAAGGCATCAATCCCACAAATTATTGTCATCGCAAAAATCTGTTTGGCCACCGGTGCAC
GAATCAGTGAGGCACTCACTCTGACTCGCACTCAAATAACCGAGTTCAAATTGACTTACACCGATACAAAAGGGAAAAGG
AATCGCAGTGTGCCAATCTCACCATCTTTATATCAAGAGATATTAGATATAGCGGTAAGCGACCATGACATATTTAACAC
CAGCTACAAAGATGCTTGGCGTTACATAAAAAGAGCCTTGCCTGAGCACGTTCCGAATGGGCAAGCGACCCATGTTTTAC
GGCATACTTTTGCTTCGCACTTTATGATGAATAAAGGGGATATTTTGGTGCTGCAGCGTATTCTTGGCCACACAAAAATC
GAGCAAACAATGGCTTATTCTCATTTTGCCCCAGAGCATTTGATGCAGGCTGTTCACCTCAATCCTTTAGAGAATTAG

Upstream 100 bases:

>100_bases
GATATATATCGAGCTTGTGCTTGTTGTGCGACATAAAACATTGTTCTACGTTTAAGCTCGAAATACACTGTTTTTATATA
CAGTTATTTTAGGCTTAATT

Downstream 100 bases:

>100_bases
TGGCGACAAAATGGCGGCAGCCATTGTAAAAGAGCGTTATTTAGCGGTTTTAGACGTAAAAAAGGCGACAATTATCACTG
TCGCCTTTTGCTATTTAGGA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSVRNLKDGSTKPWICECYPNGRAGKRVRKKFATKGEAKAFELHTMKEIDDKPWMGIKPDNRRMSELLENWWTIHGHTLK
SGKQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYRGKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLE
AIEPIKTSEKHLAYLTKPQIDEFFDELQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKR
NRSVPISPSLYQEILDIAVSDHDIFNTSYKDAWRYIKRALPEHVPNGQATHVLRHTFASHFMMNKGDILVLQRILGHTKI
EQTMAYSHFAPEHLMQAVHLNPLEN

Sequences:

>Translated_345_residues
MSVRNLKDGSTKPWICECYPNGRAGKRVRKKFATKGEAKAFELHTMKEIDDKPWMGIKPDNRRMSELLENWWTIHGHTLK
SGKQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYRGKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLE
AIEPIKTSEKHLAYLTKPQIDEFFDELQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKR
NRSVPISPSLYQEILDIAVSDHDIFNTSYKDAWRYIKRALPEHVPNGQATHVLRHTFASHFMMNKGDILVLQRILGHTKI
EQTMAYSHFAPEHLMQAVHLNPLEN
>Mature_344_residues
SVRNLKDGSTKPWICECYPNGRAGKRVRKKFATKGEAKAFELHTMKEIDDKPWMGIKPDNRRMSELLENWWTIHGHTLKS
GKQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYRGKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLEA
IEPIKTSEKHLAYLTKPQIDEFFDELQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKRN
RSVPISPSLYQEILDIAVSDHDIFNTSYKDAWRYIKRALPEHVPNGQATHVLRHTFASHFMMNKGDILVLQRILGHTKIE
QTMAYSHFAPEHLMQAVHLNPLEN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39888; Mature: 39756

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRNLKDGSTKPWICECYPNGRAGKRVRKKFATKGEAKAFELHTMKEIDDKPWMGIKPD
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHHHCCCCCCCCCCCC
NRRMSELLENWWTIHGHTLKSGKQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYR
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
GKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLEAIEPIKTSEKHLAYLTKPQI
CCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHEEECCCCH
DEFFDELQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCC
NRSVPISPSLYQEILDIAVSDHDIFNTSYKDAWRYIKRALPEHVPNGQATHVLRHTFASH
CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVHLNPLEN
HHCCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVRNLKDGSTKPWICECYPNGRAGKRVRKKFATKGEAKAFELHTMKEIDDKPWMGIKPD
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHHHCCCCCCCCCCCC
NRRMSELLENWWTIHGHTLKSGKQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYR
HHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
GKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLEAIEPIKTSEKHLAYLTKPQI
CCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHEEECCCCH
DEFFDELQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCC
NRSVPISPSLYQEILDIAVSDHDIFNTSYKDAWRYIKRALPEHVPNGQATHVLRHTFASH
CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVHLNPLEN
HHCCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347; 12050668 [H]