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The map label for this gene is fliN [H]

Identifier: 156976197

GI number: 156976197

Start: 224114

End: 224482

Strand: Reverse

Name: fliN [H]

Synonym: VIBHAR_04968

Alternate gene names: 156976197

Gene position: 224482-224114 (Counterclockwise)

Preceding gene: 156976198

Following gene: 156976196

Centisome position: 10.19

GC content: 48.24

Gene sequence:

>369_bases
ATGAGCGACGCGCAAGACAACCAAGCATTCGACGCCGATGATTTAAACTTTGACGATTTTCAATTGGAAGATTTTGAAAC
TGAACAGGCATTCGCTCCCGAGCCTGTTGCAGAGCGCGACCTAAGTTTCTTCAAAAGCATCCCAGTAACGGTCACGCTAG
AAGTCGCGAGCAAAGAGATTCCTTTGGGCGACCTGATGAAAGCCGGTGAAGGCACAGTGATTGAACTGGACAAGCTCAAT
GGCGAACCACTTGATGTGAAAGTAAACGGCTCTCTGATGGGGCAGGCAGAAGTCGTGGTTATTAACGATAAATATGGCTT
GCGCCTAATTAATGTGCATGACTCTGCGCTTAGCGGCGTAGGTCGATAA

Upstream 100 bases:

>100_bases
TGCCAGTAAGCATTGGTAACCAAACTCTTTTCTCTGGCCGTGTTGCGGAACAAGACGGCCAGCTTGTACTGATTTTTAAC
CCAGATAAGGAATCGCAGCG

Downstream 100 bases:

>100_bases
ATTCAGGTGGGTGGTGCGATGAATCTTCTGAGTGACAGTCAGCGTCGGTTGCCGTTAATGGTGATTGCATTACTGGGTTT
ACTGCTGTTTGCACTGCCAA

Product: flagellar motor switch/type III secretory pathway protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSDAQDNQAFDADDLNFDDFQLEDFETEQAFAPEPVAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLN
GEPLDVKVNGSLMGQAEVVVINDKYGLRLINVHDSALSGVGR

Sequences:

>Translated_122_residues
MSDAQDNQAFDADDLNFDDFQLEDFETEQAFAPEPVAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLN
GEPLDVKVNGSLMGQAEVVVINDKYGLRLINVHDSALSGVGR
>Mature_121_residues
SDAQDNQAFDADDLNFDDFQLEDFETEQAFAPEPVAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNG
EPLDVKVNGSLMGQAEVVVINDKYGLRLINVHDSALSGVGR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=118, Percent_Identity=33.0508474576271, Blast_Score=72, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13287; Mature: 13156

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAQDNQAFDADDLNFDDFQLEDFETEQAFAPEPVAERDLSFFKSIPVTVTLEVASKEI
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCC
PLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLRLINVHDSALSGV
CHHHHHHCCCCCEEEEECCCCCEEEEEECCCEECCEEEEEEECCCCEEEEEECCHHHCCC
GR
CC
>Mature Secondary Structure 
SDAQDNQAFDADDLNFDDFQLEDFETEQAFAPEPVAERDLSFFKSIPVTVTLEVASKEI
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCC
PLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLRLINVHDSALSGV
CHHHHHHCCCCCEEEEECCCCCEEEEEECCCEECCEEEEEEECCCCEEEEEECCHHHCCC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]