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The map label for this gene is lafU [H]

Identifier: 156976178

GI number: 156976178

Start: 208360

End: 209352

Strand: Reverse

Name: lafU [H]

Synonym: VIBHAR_04949

Alternate gene names: 156976178

Gene position: 209352-208360 (Counterclockwise)

Preceding gene: 156976179

Following gene: 156976177

Centisome position: 9.5

GC content: 50.25

Gene sequence:

>993_bases
ATGCAAAAACAAGAGCATGTGGTGTTCAAACGCGCGAAAGCACATAACCATGACGAGTTTCATGGTGGCGCGTGGAAGGT
CGCGTTTGCCGACTTCATGATCGCGTTGATGGCGCTGTTTCTTGTCCTTTGGGTCATGCAAGTGGTCGACAAGGAAGAGC
GCAAAGCCATTGTGGCGCACCTTCATAGTTCGAGCGTTTTTGATAAGAGCTACGGTAACCCTTTCGATACCTCGCAAAGT
ATCTCTCCTATCGACCTGGCACAGGACTCTTCTGTGCCAAGTAAGCACAACTCTAACCACGTCGTCAGCTCTTTCTTCCA
AGGTGACGGCGATGGCCCAGAGATTGACTCGCTTATCCCAGGCAACTTCGATACCCAAGAGCAACTCGCTCTGCTGGCCA
AAGTGATTGACGAAGTCGTCGGGCAAATCAGCGCGCAGGGTAACGTTAATGTCACCATTACCCCGCAAGGTCTGCGCATT
GTGCTGCAAGATGATTACAAGCAACACATGTTCAGCCGTGGAGGCGCAGAATTAACCCCTTTCTTTGAGGATTTGTTACT
TGCGCTTGCCCCCGTGTTCGAACGCATCAGCAATCCATTGTTCATCAGTGGCCATACTGACTCGACACCGTTCAAAAAGC
GTTTTGGTAGACAATCAAACTGGGCGCTATCCGCGTCTCGTGCCGATGTGGCAAGAAATACCTTAGTGGAAGGCGGCATG
CCAGACGATCGCGTCATGCAAGTGACTGGGATGTCAGATCGTGCCTTGCTTAACCCAGAAGAGCCCGACTCTAGCGAGAA
CCGCCGAATTGAGTTATTCATTCTGACCACACCAGCAGCACAAGTTTTGGAAACCTTCTTCGGCAATCAAGAGGGCAGTG
AGCTACAAAAAGCCAAACAGCAAGCAGAGTTTAACCAGCCAGTGATTAGGCAAGAAGTGATTCGTTACTCAGTCGAACCT
GACGATACCAAACCTCAGATTCAAGACCTATAA

Upstream 100 bases:

>100_bases
CTACCTTGCTCGCTATCGACGCTGGCCGTAAACACATTCAGTTAGACATCAAACCAACTTTCAACCAAATGGAGAAGTGG
CTAGCTGAACAGGAGGGATA

Downstream 100 bases:

>100_bases
CCCCCTAAAAGGTCACCAGTTTCTACCCTCTGCGTGACCTTTTCCCCAACGATAATATTGCTGAAATTTGTGTAGTTGAG
TTCGATATGTCCATACCTGC

Product: flagellar motor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MQKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLHSSSVFDKSYGNPFDTSQS
ISPIDLAQDSSVPSKHNSNHVVSSFFQGDGDGPEIDSLIPGNFDTQEQLALLAKVIDEVVGQISAQGNVNVTITPQGLRI
VLQDDYKQHMFSRGGAELTPFFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM
PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILTTPAAQVLETFFGNQEGSELQKAKQQAEFNQPVIRQEVIRYSVEP
DDTKPQIQDL

Sequences:

>Translated_330_residues
MQKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLHSSSVFDKSYGNPFDTSQS
ISPIDLAQDSSVPSKHNSNHVVSSFFQGDGDGPEIDSLIPGNFDTQEQLALLAKVIDEVVGQISAQGNVNVTITPQGLRI
VLQDDYKQHMFSRGGAELTPFFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM
PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILTTPAAQVLETFFGNQEGSELQKAKQQAEFNQPVIRQEVIRYSVEP
DDTKPQIQDL
>Mature_330_residues
MQKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLHSSSVFDKSYGNPFDTSQS
ISPIDLAQDSSVPSKHNSNHVVSSFFQGDGDGPEIDSLIPGNFDTQEQLALLAKVIDEVVGQISAQGNVNVTITPQGLRI
VLQDDYKQHMFSRGGAELTPFFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM
PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILTTPAAQVLETFFGNQEGSELQKAKQQAEFNQPVIRQEVIRYSVEP
DDTKPQIQDL

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=289, Percent_Identity=32.1799307958478, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 36823; Mature: 36823

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH
CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LHSSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSFFQGDGDGPEIDSLIP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
GNFDTQEQLALLAKVIDEVVGQISAQGNVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHCCCCCCCH
FFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM
HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHCCCC
PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILTTPAAQVLETFFGNQEGSELQKAKQ
CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHH
QAEFNQPVIRQEVIRYSVEPDDTKPQIQDL
HHHCCCCHHHHHHHHHCCCCCCCCCHHCCC
>Mature Secondary Structure
MQKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH
CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LHSSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSFFQGDGDGPEIDSLIP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
GNFDTQEQLALLAKVIDEVVGQISAQGNVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHCCCCCCCH
FFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM
HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHCCCC
PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILTTPAAQVLETFFGNQEGSELQKAKQ
CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHH
QAEFNQPVIRQEVIRYSVEPDDTKPQIQDL
HHHCCCCHHHHHHHHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]