Definition Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession NC_009784
Length 2,204,018

Click here to switch to the map view.

The map label for this gene is 156976135

Identifier: 156976135

GI number: 156976135

Start: 173366

End: 173803

Strand: Reverse

Name: 156976135

Synonym: VIBHAR_04906

Alternate gene names: NA

Gene position: 173803-173366 (Counterclockwise)

Preceding gene: 156976136

Following gene: 156976134

Centisome position: 7.89

GC content: 45.89

Gene sequence:

>438_bases
ATGGCAACGACGGCATCGCATCACATTCAGAAGTTTGTTCGCTCTATCGCTGAAGACGTCAAACTCTACCAGCAACTATC
GGGGCTGATTCAGCAGCAAAAAGCACTGTATTTGAAGTTCGATGGTGAGGCGCTAAACGAGAATATTCAAAAACAAATGC
CGATTTTGAATCAGCTTGGTCGCTCAGCGAGTGAAAGAAGCCAGCTAATGCGTGCACTTGGGTTACCGTGTAATGAAACC
AGTGTGAACCGAATTTTCAATGCCCTGCCATCGAAAATTAGCACACAAGCAAGAAAGCAATGGGCGCTGTTGGAATCCTT
GGTGAAACAATGCCAACAGGACAATCAGAGCAATGGCCAAAGCTCTGCAGCGTTCCAAGAGTTAGTCAGTCAACTCAAAC
AACCTGTGCAACACACTTATGAAGAGCGTTCGTTCTAA

Upstream 100 bases:

>100_bases
TTAGCTCGTGGTGAACTGAATCTAGATACCCAAGCACTATCTAAAGCAGTAATGCAATTTCACACTGGTCACGAGTAACA
TAACGCACTAGGAGTCATGC

Downstream 100 bases:

>100_bases
ACAACGATTCTCGCTTTGCCTACAGAGTCTTCCGCCATCCCGGTCGATGACTGTAGGCTTTTTTGTTTTTTGCTTGACCT
TCTTGTCTCCATTGACTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MATTASHHIQKFVRSIAEDVKLYQQLSGLIQQQKALYLKFDGEALNENIQKQMPILNQLGRSASERSQLMRALGLPCNET
SVNRIFNALPSKISTQARKQWALLESLVKQCQQDNQSNGQSSAAFQELVSQLKQPVQHTYEERSF

Sequences:

>Translated_145_residues
MATTASHHIQKFVRSIAEDVKLYQQLSGLIQQQKALYLKFDGEALNENIQKQMPILNQLGRSASERSQLMRALGLPCNET
SVNRIFNALPSKISTQARKQWALLESLVKQCQQDNQSNGQSSAAFQELVSQLKQPVQHTYEERSF
>Mature_144_residues
ATTASHHIQKFVRSIAEDVKLYQQLSGLIQQQKALYLKFDGEALNENIQKQMPILNQLGRSASERSQLMRALGLPCNETS
VNRIFNALPSKISTQARKQWALLESLVKQCQQDNQSNGQSSAAFQELVSQLKQPVQHTYEERSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16448; Mature: 16317

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTASHHIQKFVRSIAEDVKLYQQLSGLIQQQKALYLKFDGEALNENIQKQMPILNQLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHC
RSASERSQLMRALGLPCNETSVNRIFNALPSKISTQARKQWALLESLVKQCQQDNQSNGQ
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSAAFQELVSQLKQPVQHTYEERSF
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATTASHHIQKFVRSIAEDVKLYQQLSGLIQQQKALYLKFDGEALNENIQKQMPILNQLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHC
RSASERSQLMRALGLPCNETSVNRIFNALPSKISTQARKQWALLESLVKQCQQDNQSNGQ
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSAAFQELVSQLKQPVQHTYEERSF
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA