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The map label for this gene is ydcP [H]

Identifier: 156976011

GI number: 156976011

Start: 43814

End: 45805

Strand: Reverse

Name: ydcP [H]

Synonym: VIBHAR_04781

Alternate gene names: 156976011

Gene position: 45805-43814 (Counterclockwise)

Preceding gene: 156976012

Following gene: 156976010

Centisome position: 2.08

GC content: 47.49

Gene sequence:

>1992_bases
GTGATACGCGACCAATTTGAGTTATTAGCCCCGGGCGGCGATCTGGATTCCATCAAAGCAGCCATTGCTGCAGGTGCCGA
TGCCATTTACTGCGGATTGGACCGCTTTAATGCCCGCAACCGAGCCACCAACCTCACCTTAGATAACTTGAATGGCGTGT
TACTGCTTGCTCATCAGCACAACTGTAAGATCTTCTTGACTCTTAACGTGTTGATTCTGGAGAGCGAAATTCCCGCCATC
GTGCGCTTGCTCAGCCAGTTAAACACCACCGCAATTGATGGCGTGATCGTGCAAGATCTTGGTTTGGCTTACATTCTCAA
GAATCATTTCCCAGATCTAGACGTACACGCCTCCACTCAACTCAACACGCACAACGAAGGACAGATCTTGTTCCTGAATC
AGTTGACGGCAAGCCGCGTAAACCTCTCTCGTGAACTGAACATCAATGAGATCAAGCATCTGGCTCAGTTTGGTCGTGAG
CATGACGTGATGATGGAAGTGTTTGTGCATGGCTCTTACTGCATTGGTTTCTCTGGCATCTGTTACATCAGTTCTGCGCG
CAACGGTGCTTCGGGCAACCGTGGTCGTTGTAGCCAGCCTTGTCGTGAGCAATACGAAACCACCAAAACAGGCAACAGCT
ACCCTCTCAACATGAAGGACAACTCAGCATTTGGCGATTTAGAAGCGCTTGCCGATGCGGGTGTGTATTCGTTGAAAGTG
GAAGGCCGCATTAAGAAATCCCACTACGTTTATACCGTGGTCGATAACTGGCGTAAACAGATTGACCGCTTATGTGATGG
CGTAGAACTGTCGAACGACACCACTGAGTTGTACACGGTATTTAACCGTGATTTCTCTAACGCGTTTTTACAAGGCGATT
TCGGTAAAGCGATGTACATCGACAACCCTCGCGATCACGCCGTAAAATACTTCTCGAAGATCTACAAATGCGAATCCGCC
GATGATTTACAAGGCGTGAAGAAGAAGCTCTACGACGACAAAACCGCAATCATTGAGAAGGTTGCAGAGAAGACTCAAGA
TTTTGATGTAACTACAACTCAAACCTCTGGCAGCAGCCTAAAAGGCGCGATTGATGTACCGACTTTGCCGACGCTACCTC
AGCCAGATATGCGCAAAGGCGCTCCGAAGCTATCTGTCTTAATTTCATCAATAGAAGACACCGCACTATGCGAAGACAGC
AATGTCGATGTGTATTTCCAGCTACCAATGGGGTTGGCGGGTGAACTGAATGCGATGATTGAGTTGTTCCAAGCAAACCA
AAGATTGAAACCTTGGTTCCCTGCAATTTTGATTGGTGACGATTACCAAGCCGCACGTACATTCTTAAAAACAGTAAAGC
CAGAATTGTCGATCACCAATAATTCTGGTGTGGGTATTTTGGCTCAAGCGCAAGGGTTAGGTTGGATTGCGGGCCCGCAG
ATGAACACAATGAACTCGTACTCGTTCAAATGTTTGCAAGATGAGTTCGCTGCAAGCGGTGCGTTTATCTCTAACGAGCT
GAACATGAAGCAGATGCGCCACATTAAGCGCCCGCACAACATGCGCAGCTACTACAGCATTTATCATCCGAACACTCTGC
TGACCAGTCGACAGTGTTTGTTCCAACAAACCGAAGGTTGCCGCAAAATTAAGGTTAACAAAGGCTGTTTGAAGCGTTGT
GACAAGCGCACATCGATCATCAACCTAAAAGACAACCCATATGTGGTACAAAAACAAAAAGGCAGTCACAACTCGATCTA
CAGCGAGCACAACGTACTGAACCTGCAAGTACTGCAGGATTTGCCGCAGCTGTTAACTGACGTGTTGATCGACCTACGCG
ACATCCAGACAGAAACTAAAGTCACGATGGCCAAACCTGAATTGATCGATGCCTTTACCGCTCTGCTGAATGAACATAAT
GAGCAGCATGTTGAAGCACTTAATACTGCGATTCACCCGACGGCAAACGCTCAATACTTGAAAGGCTTGTAA

Upstream 100 bases:

>100_bases
CCAATAATTGATTCAGATTAATAAAGCGTTAATCAGTCCAACATCAAAACCGTGGAGCACATAAAATACGCGTCCTATTT
TACTGAGTAAGAGTTAACGA

Downstream 100 bases:

>100_bases
CTGAATCTCATCAGATTCGACTGCACAATTTATGGAAGACTTATGCACCCAATGAAACAAGAAACACTGAGCTACTTTGA
TGATTTGAACTACTGCGTGA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MIRDQFELLAPGGDLDSIKAAIAAGADAIYCGLDRFNARNRATNLTLDNLNGVLLLAHQHNCKIFLTLNVLILESEIPAI
VRLLSQLNTTAIDGVIVQDLGLAYILKNHFPDLDVHASTQLNTHNEGQILFLNQLTASRVNLSRELNINEIKHLAQFGRE
HDVMMEVFVHGSYCIGFSGICYISSARNGASGNRGRCSQPCREQYETTKTGNSYPLNMKDNSAFGDLEALADAGVYSLKV
EGRIKKSHYVYTVVDNWRKQIDRLCDGVELSNDTTELYTVFNRDFSNAFLQGDFGKAMYIDNPRDHAVKYFSKIYKCESA
DDLQGVKKKLYDDKTAIIEKVAEKTQDFDVTTTQTSGSSLKGAIDVPTLPTLPQPDMRKGAPKLSVLISSIEDTALCEDS
NVDVYFQLPMGLAGELNAMIELFQANQRLKPWFPAILIGDDYQAARTFLKTVKPELSITNNSGVGILAQAQGLGWIAGPQ
MNTMNSYSFKCLQDEFAASGAFISNELNMKQMRHIKRPHNMRSYYSIYHPNTLLTSRQCLFQQTEGCRKIKVNKGCLKRC
DKRTSIINLKDNPYVVQKQKGSHNSIYSEHNVLNLQVLQDLPQLLTDVLIDLRDIQTETKVTMAKPELIDAFTALLNEHN
EQHVEALNTAIHPTANAQYLKGL

Sequences:

>Translated_663_residues
MIRDQFELLAPGGDLDSIKAAIAAGADAIYCGLDRFNARNRATNLTLDNLNGVLLLAHQHNCKIFLTLNVLILESEIPAI
VRLLSQLNTTAIDGVIVQDLGLAYILKNHFPDLDVHASTQLNTHNEGQILFLNQLTASRVNLSRELNINEIKHLAQFGRE
HDVMMEVFVHGSYCIGFSGICYISSARNGASGNRGRCSQPCREQYETTKTGNSYPLNMKDNSAFGDLEALADAGVYSLKV
EGRIKKSHYVYTVVDNWRKQIDRLCDGVELSNDTTELYTVFNRDFSNAFLQGDFGKAMYIDNPRDHAVKYFSKIYKCESA
DDLQGVKKKLYDDKTAIIEKVAEKTQDFDVTTTQTSGSSLKGAIDVPTLPTLPQPDMRKGAPKLSVLISSIEDTALCEDS
NVDVYFQLPMGLAGELNAMIELFQANQRLKPWFPAILIGDDYQAARTFLKTVKPELSITNNSGVGILAQAQGLGWIAGPQ
MNTMNSYSFKCLQDEFAASGAFISNELNMKQMRHIKRPHNMRSYYSIYHPNTLLTSRQCLFQQTEGCRKIKVNKGCLKRC
DKRTSIINLKDNPYVVQKQKGSHNSIYSEHNVLNLQVLQDLPQLLTDVLIDLRDIQTETKVTMAKPELIDAFTALLNEHN
EQHVEALNTAIHPTANAQYLKGL
>Mature_663_residues
MIRDQFELLAPGGDLDSIKAAIAAGADAIYCGLDRFNARNRATNLTLDNLNGVLLLAHQHNCKIFLTLNVLILESEIPAI
VRLLSQLNTTAIDGVIVQDLGLAYILKNHFPDLDVHASTQLNTHNEGQILFLNQLTASRVNLSRELNINEIKHLAQFGRE
HDVMMEVFVHGSYCIGFSGICYISSARNGASGNRGRCSQPCREQYETTKTGNSYPLNMKDNSAFGDLEALADAGVYSLKV
EGRIKKSHYVYTVVDNWRKQIDRLCDGVELSNDTTELYTVFNRDFSNAFLQGDFGKAMYIDNPRDHAVKYFSKIYKCESA
DDLQGVKKKLYDDKTAIIEKVAEKTQDFDVTTTQTSGSSLKGAIDVPTLPTLPQPDMRKGAPKLSVLISSIEDTALCEDS
NVDVYFQLPMGLAGELNAMIELFQANQRLKPWFPAILIGDDYQAARTFLKTVKPELSITNNSGVGILAQAQGLGWIAGPQ
MNTMNSYSFKCLQDEFAASGAFISNELNMKQMRHIKRPHNMRSYYSIYHPNTLLTSRQCLFQQTEGCRKIKVNKGCLKRC
DKRTSIINLKDNPYVVQKQKGSHNSIYSEHNVLNLQVLQDLPQLLTDVLIDLRDIQTETKVTMAKPELIDAFTALLNEHN
EQHVEALNTAIHPTANAQYLKGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=316, Percent_Identity=35.4430379746835, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI1788397, Length=338, Percent_Identity=28.4023668639053, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1789548, Length=297, Percent_Identity=31.3131313131313, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 74089; Mature: 74089

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDQFELLAPGGDLDSIKAAIAAGADAIYCGLDRFNARNRATNLTLDNLNGVLLLAHQH
CCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCEEEEECCCCEEEEEECC
NCKIFLTLNVLILESEIPAIVRLLSQLNTTAIDGVIVQDLGLAYILKNHFPDLDVHASTQ
CCEEEEEEEEEEEECCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCEEECCC
LNTHNEGQILFLNQLTASRVNLSRELNINEIKHLAQFGREHDVMMEVFVHGSYCIGFSGI
CCCCCCCCEEEEECCHHHHHCCHHCCCHHHHHHHHHHCCCHHHEEHEEECCCEEECCCCE
CYISSARNGASGNRGRCSQPCREQYETTKTGNSYPLNMKDNSAFGDLEALADAGVYSLKV
EEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEE
EGRIKKSHYVYTVVDNWRKQIDRLCDGVELSNDTTELYTVFNRDFSNAFLQGDFGKAMYI
CCEEECCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEHEECCCCCCCHHEECCCCCEEEE
DNPRDHAVKYFSKIYKCESADDLQGVKKKLYDDKTAIIEKVAEKTQDFDVTTTQTSGSSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
KGAIDVPTLPTLPQPDMRKGAPKLSVLISSIEDTALCEDSNVDVYFQLPMGLAGELNAMI
CCEECCCCCCCCCCCHHHHCCCHHHHHHHHCCHHHEECCCCCEEEEEECCCCCHHHHHHH
ELFQANQRLKPWFPAILIGDDYQAARTFLKTVKPELSITNNSGVGILAQAQGLGWIAGPQ
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEECCC
MNTMNSYSFKCLQDEFAASGAFISNELNMKQMRHIKRPHNMRSYYSIYHPNTLLTSRQCL
CCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
FQQTEGCRKIKVNKGCLKRCDKRTSIINLKDNPYVVQKQKGSHNSIYSEHNVLNLQVLQD
HHHHCCCEEEEECHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEHHHHHH
LPQLLTDVLIDLRDIQTETKVTMAKPELIDAFTALLNEHNEQHVEALNTAIHPTANAQYL
HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHH
KGL
CCC
>Mature Secondary Structure
MIRDQFELLAPGGDLDSIKAAIAAGADAIYCGLDRFNARNRATNLTLDNLNGVLLLAHQH
CCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCEEEEECCCCEEEEEECC
NCKIFLTLNVLILESEIPAIVRLLSQLNTTAIDGVIVQDLGLAYILKNHFPDLDVHASTQ
CCEEEEEEEEEEEECCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCEEECCC
LNTHNEGQILFLNQLTASRVNLSRELNINEIKHLAQFGREHDVMMEVFVHGSYCIGFSGI
CCCCCCCCEEEEECCHHHHHCCHHCCCHHHHHHHHHHCCCHHHEEHEEECCCEEECCCCE
CYISSARNGASGNRGRCSQPCREQYETTKTGNSYPLNMKDNSAFGDLEALADAGVYSLKV
EEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEE
EGRIKKSHYVYTVVDNWRKQIDRLCDGVELSNDTTELYTVFNRDFSNAFLQGDFGKAMYI
CCEEECCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEHEECCCCCCCHHEECCCCCEEEE
DNPRDHAVKYFSKIYKCESADDLQGVKKKLYDDKTAIIEKVAEKTQDFDVTTTQTSGSSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
KGAIDVPTLPTLPQPDMRKGAPKLSVLISSIEDTALCEDSNVDVYFQLPMGLAGELNAMI
CCEECCCCCCCCCCCHHHHCCCHHHHHHHHCCHHHEECCCCCEEEEEECCCCCHHHHHHH
ELFQANQRLKPWFPAILIGDDYQAARTFLKTVKPELSITNNSGVGILAQAQGLGWIAGPQ
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEECCC
MNTMNSYSFKCLQDEFAASGAFISNELNMKQMRHIKRPHNMRSYYSIYHPNTLLTSRQCL
CCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
FQQTEGCRKIKVNKGCLKRCDKRTSIINLKDNPYVVQKQKGSHNSIYSEHNVLNLQVLQD
HHHHCCCEEEEECHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEHHHHHH
LPQLLTDVLIDLRDIQTETKVTMAKPELIDAFTALLNEHNEQHVEALNTAIHPTANAQYL
HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHH
KGL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]