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The map label for this gene is bkdR [H]

Identifier: 156975973

GI number: 156975973

Start: 13884

End: 14366

Strand: Reverse

Name: bkdR [H]

Synonym: VIBHAR_04743

Alternate gene names: 156975973

Gene position: 14366-13884 (Counterclockwise)

Preceding gene: 156975977

Following gene: 156975972

Centisome position: 0.65

GC content: 45.76

Gene sequence:

>483_bases
ATGAAAAAGAAAGAATCCACCAACTTTGAATTGGATAGTACTGATTTCGCCATCCTTGACCATATTCAGAAAGATGGTCG
CATGAGCAATTCTAAGCTTGCCGAGACCGTCAACCTGAGTGAAACACCCTGCTGGCGACGCTGGAAGAAAATGGAAGAGG
AAGGTTACATTGAGGGTTACGCTGCAAAGCTGAACCGTAAAAAACTCGGTTTCCAAGTTTCTGGTTTTACTCTGGTTACC
CTCGGCAGTCATGAGGTAGAAAACACCACGCCTTTTGAAGACTTTGTCGCAGAAACCGATTGGATCTTAATGTGTCACTG
CATTGCAGGCAGCGCGGATTATATGGTGCAAGTGGTGGCTCGAGACTTAGACGAATACTTTGACCGCATCAGTGCTATTC
GCCGCGTGAAAGGCATCAGCTCCATTCAATCCAACGTATCCGTAAAGGAAATTAAGAGTACTTTCCAGTTGCCGCTAGAG
TAA

Upstream 100 bases:

>100_bases
ATCAACGAATATGGGAACAGTCTAACGATTTGGGTAGAAAGAAAATTGCTATCTGCGCTACGATAAAAGCCAATTTGAGC
AGACTATTTCCAGAGTGACT

Downstream 100 bases:

>100_bases
TCATGATTCCAGACAAAGGGTGAACAACTCACCCTTTGTCTTCATCACTGGTCAGAATAGATGTCGAGACAAGATAAATT
CTGATAGGCAGTGTGGTTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKKKESTNFELDSTDFAILDHIQKDGRMSNSKLAETVNLSETPCWRRWKKMEEEGYIEGYAAKLNRKKLGFQVSGFTLVT
LGSHEVENTTPFEDFVAETDWILMCHCIAGSADYMVQVVARDLDEYFDRISAIRRVKGISSIQSNVSVKEIKSTFQLPLE

Sequences:

>Translated_160_residues
MKKKESTNFELDSTDFAILDHIQKDGRMSNSKLAETVNLSETPCWRRWKKMEEEGYIEGYAAKLNRKKLGFQVSGFTLVT
LGSHEVENTTPFEDFVAETDWILMCHCIAGSADYMVQVVARDLDEYFDRISAIRRVKGISSIQSNVSVKEIKSTFQLPLE
>Mature_160_residues
MKKKESTNFELDSTDFAILDHIQKDGRMSNSKLAETVNLSETPCWRRWKKMEEEGYIEGYAAKLNRKKLGFQVSGFTLVT
LGSHEVENTTPFEDFVAETDWILMCHCIAGSADYMVQVVARDLDEYFDRISAIRRVKGISSIQSNVSVKEIKSTFQLPLE

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=153, Percent_Identity=34.640522875817, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787116, Length=155, Percent_Identity=31.6129032258064, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18310; Mature: 18310

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKESTNFELDSTDFAILDHIQKDGRMSNSKLAETVNLSETPCWRRWKKMEEEGYIEGY
CCCCCCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHH
AAKLNRKKLGFQVSGFTLVTLGSHEVENTTPFEDFVAETDWILMCHCIAGSADYMVQVVA
HHHHHHHHCCEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHEEEHHHCCCHHHHHHHHH
RDLDEYFDRISAIRRVKGISSIQSNVSVKEIKSTFQLPLE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKKESTNFELDSTDFAILDHIQKDGRMSNSKLAETVNLSETPCWRRWKKMEEEGYIEGY
CCCCCCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHH
AAKLNRKKLGFQVSGFTLVTLGSHEVENTTPFEDFVAETDWILMCHCIAGSADYMVQVVA
HHHHHHHHCCEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHEEEHHHCCCHHHHHHHHH
RDLDEYFDRISAIRRVKGISSIQSNVSVKEIKSTFQLPLE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]