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The map label for this gene is int [H]

Identifier: 156979174

GI number: 156979174

Start: 918952

End: 920001

Strand: Reverse

Name: int [H]

Synonym: SAHV_0843

Alternate gene names: 156979174

Gene position: 920001-918952 (Counterclockwise)

Preceding gene: 156979176

Following gene: 156979168

Centisome position: 31.94

GC content: 32.48

Gene sequence:

>1050_bases
ATGCCAGTATATAAGGATGATAATACAGGTAAATGGTATTTTTCCATTAGATATAAAGATGTATACGGTAATAACAAACG
TAAGATGCAACGCGGTTTTTCAACTAAGCGTGAAGCTAAGAGAGCAGAGGCTATCTTTTTGAATGACGTAAACGAAGGAT
ATAGCGATTCTAAAACATTTGATTATGTTTTTCATCACTATTTAGAAAATAGCGATTTGAGACCTAAAACAAAACGACGC
AAACAAAATGAATATCATAAACACTTTAAAGCTAAGTTCGGGCACATAAAAATGAATAAGATAACGCAAAATCAATGCCA
AGAGTTTCGTAAATATCTAATAGAGAATGTAGCGTCAACAAATTCTGCTCGTACAATTTGGTCAGGTTTTAAAGTTGTAA
TTAATTATGCCAAAAAATACTTTGGATTACGTACAGATCCAACAATATCAATTAAACCTATTCCGCGTGTAAAGCCAAAA
CCTAAGTTTATGATGCGTGAAGAATTTGAAGAAAGAATCAAAGACATTGAAGAGCAAGATTACAGAGAGTTATTTACATT
AATGTTTTATACAGGTTTAAGGATTGGCGAAGCTATGGCTCTTGTTTGGACAGACTACAATAAATACAAAAAAGAGATAT
CCATAAATAAAACAATGGACATCTCTAATAGAACTATATATCCGAGACCAAAAACAGATAGTTCAGAGGATATTGTTCCT
TTACCTAAATTCATCAATACAATGTTAACTGAACGACATCAACGTGAAAAAGAGTTAAACAAATATTTTGATGAACGTAG
TTATTTTATTTTCGGAGGAATGGCTCCCAAACATTACAGTCATGTTCAAAAGAAATTTCAAAAAGCTTTCCCCCATTATA
ACATTCACGCGTTAAGACATTCTTATGCATCTTATCTTGCAAATAATGGTGTAGATATTTTCGTTTTACAGTCACTCATG
AGACATGCTCAAATCACTGAAACGATGGGCACTTACAGCCATTTATACACTCAGAAAAAACACGATGCAATAGCCATTTT
TGACAAGTAA

Upstream 100 bases:

>100_bases
CTTTTTATTTTATTATATCACATTTAGTACCTAGTACTAAATTTCGGGTAGCTCGCCTACCCTTATTATTTTTTGCCAAT
TTTGAGGAGGGAGAAGCAAA

Downstream 100 bases:

>100_bases
ATGGTATCAAAATGGTATCAATAGCCATTTCCGGAAGTCAAGAATGGCTTAACAACGGGGTTTAAAGCTATCCAATACTA
CCTTCCATTTCGAACTTGAT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MPVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSKTFDYVFHHYLENSDLRPKTKRR
KQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPK
PKFMMREEFEERIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVP
LPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGVDIFVLQSLM
RHAQITETMGTYSHLYTQKKHDAIAIFDK

Sequences:

>Translated_349_residues
MPVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSKTFDYVFHHYLENSDLRPKTKRR
KQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPK
PKFMMREEFEERIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVP
LPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGVDIFVLQSLM
RHAQITETMGTYSHLYTQKKHDAIAIFDK
>Mature_348_residues
PVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSKTFDYVFHHYLENSDLRPKTKRRK
QNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKP
KFMMREEFEERIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVPL
PKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMR
HAQITETMGTYSHLYTQKKHDAIAIFDK

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41811; Mature: 41680

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSKTF
CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCHHHHHHHHHEEEEECCCCCCCCCHHH
DYVFHHYLENSDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAST
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCC
NSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEERIKDIEEQD
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVP
HHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCC
LPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRH
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHH
SYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAIAIFDK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
PVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSKTF
CCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCHHHHHHHHHEEEEECCCCCCCCCHHH
DYVFHHYLENSDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAST
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCC
NSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEERIKDIEEQD
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVP
HHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCC
LPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRH
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHH
SYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAIAIFDK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]