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The map label for this gene is int [H]

Identifier: 156979110

GI number: 156979110

Start: 869907

End: 871013

Strand: Reverse

Name: int [H]

Synonym: SAHV_0779

Alternate gene names: 156979110

Gene position: 871013-869907 (Counterclockwise)

Preceding gene: 156979111

Following gene: 156979097

Centisome position: 30.24

GC content: 33.88

Gene sequence:

>1107_bases
ATGTCATATAACTTAAACTTATCCCACAACATATATAAAGACGCTAAACTTGGCACTTACTATTTCCGTATCACTTACTA
TGACAAAAGCAATACTCGTAAGTACATAACACGTAAGGGGTTTAAACAACGTAAAGATGCAGTAAAGAAATGTAACGAAA
TGATGGACGAATTAGAGGGAGTCGGACACCTTAATAGATTACCTTTTGACAAGCTCGTTGAAGAATATATAGACTGGTAT
TCAGCACGTCGAAAGACATCAAGTGTAAAAGCATTAAAGACACATACCAATAACCATTTGCTACCTTATTTTAAATCTAT
GGATGTATTTAAAATGACTACACAAGATGTGATGAAGTTTCAGAATAAGAAATTAAAAGAGGGACATTCTGGAGACTACT
TAAAGAAGATGCATGTATATTTAGTATCATTACTGAATCATGCAATGAAGTTTCATGAGTTAAAACAAAATGTTGCATCT
CTTGTAGGGAATTTTGAAATAGAATCACAGAAACGATTGAATTATTGGACGTTAGAACAATTCAATCAATTCTATGAGGC
GCTTGCTACACAACAACAAAAATTATTTTTCAAACTATTGTTCTACTCTGGAGCAAGAAAGGGCGAAATTAGAGCTCTCA
CATGGCGCGATATTAACTTTGATGATGACTTTATCCATATAAACAAAACAGACTATCACGGTGAAGTGACAGCCCCTAAA
ACGAAATCAGCCATACGTGATATATATTTACCTACTCACATGATGTATGACATCAAAGATTATTTAATTTGGTATAAAGA
GAATAACATATACAAGGACGACTATGTATTGTTTGGCACATTCTATAAAGCTTACAGCGAGTCTACTATTGATCGTTGGT
TTACTAACGCATTAAAAGTGTTGGATGAGCAATTACCAAACGGACAAAATTTCCCTAGAATCGTTATACACGAGTTAAGA
CATAGCCATGCATCTATGCTAGTTAATCTAGGGGCTAGTGTAATGATTATAGCTCAGCGTTTAGGTCACAGCGATACGAC
TGAAGTATATAACCGATATGGTCATTTATATCCTAGTACACAGAAAGAAATAGTTAAATACTTATAA

Upstream 100 bases:

>100_bases
TCCTTACGACAATATCTAACAAATACTTTGATCTATTAGAATACATTGATGACTATAGAGTTAAACATGATCTAGAGAAA
ATTAGTGAAGAGTGAATACA

Downstream 100 bases:

>100_bases
GGCACTGCCAACTAAAATTGGTTGTGTCTTTTTGTATCCTGTGCACTATCTGTGCACTTTTTGTGCACTCAAAAATAAAA
AGCCTACAACCACTAAGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSYNLNLSHNIYKDAKLGTYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEGVGHLNRLPFDKLVEEYIDWY
SARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVAS
LVGNFEIESQKRLNYWTLEQFNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPK
TKSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKVLDEQLPNGQNFPRIVIHELR
HSHASMLVNLGASVMIIAQRLGHSDTTEVYNRYGHLYPSTQKEIVKYL

Sequences:

>Translated_368_residues
MSYNLNLSHNIYKDAKLGTYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEGVGHLNRLPFDKLVEEYIDWY
SARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVAS
LVGNFEIESQKRLNYWTLEQFNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPK
TKSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKVLDEQLPNGQNFPRIVIHELR
HSHASMLVNLGASVMIIAQRLGHSDTTEVYNRYGHLYPSTQKEIVKYL
>Mature_367_residues
SYNLNLSHNIYKDAKLGTYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEGVGHLNRLPFDKLVEEYIDWYS
ARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASL
VGNFEIESQKRLNYWTLEQFNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPKT
KSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKVLDEQLPNGQNFPRIVIHELRH
SHASMLVNLGASVMIIAQRLGHSDTTEVYNRYGHLYPSTQKEIVKYL

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43819; Mature: 43688

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNLNLSHNIYKDAKLGTYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEG
CCEECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VGHLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHH
QNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWTLEQ
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH
FNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCH
TKSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKV
HHHHHHHHHCCHHHHHHHHHHEEEEECCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LDEQLPNGQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSDTTEVYNRYGHLYPST
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCH
QKEIVKYL
HHHHHHHC
>Mature Secondary Structure 
SYNLNLSHNIYKDAKLGTYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEG
CEECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VGHLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHH
QNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWTLEQ
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHH
FNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCH
TKSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKV
HHHHHHHHHCCHHHHHHHHHHEEEEECCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LDEQLPNGQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSDTTEVYNRYGHLYPST
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCH
QKEIVKYL
HHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]