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The map label for this gene is yjiR [C]

Identifier: 156936609

GI number: 156936609

Start: 51287

End: 52621

Strand: Direct

Name: yjiR [C]

Synonym: ESA_pESA3p05490

Alternate gene names: 156936609

Gene position: 51287-52621 (Clockwise)

Preceding gene: 156936603

Following gene: 156936610

Centisome position: 39.09

GC content: 63.45

Gene sequence:

>1335_bases
GTGAAAGCGCGCTACAAAACGCTAGTCGATCGCTATGCATCGGCCATCCGCAGCGGTGAGTTAACCGCAGGCGTTCAGTT
ACCCACGCACCGGCGGCTGGCGGCGGAACACCATGTCTCGCTTGCCACGGCGACGCGCGTTTACGCCGAGCTGGAGGCGA
TGGGGCTGGTGAGCGGTGAAACAGGGCGGGGAACCTTTGTAAGGGATATCGCGCTGCCGCCGGGGCTGGGCATTGATCAA
CATGCCGTGGCGGCCGATGCGCTGGATCTGAGTTTTAACTATCCCGCCCTGCCAGGGCAGGCGGAACGGCTGCGCGACGC
GTTGCGCCAGCTTGCTTCGGCCGGTGATATCGAGGCGCTGTTACGTTATCAGCCGCACGCCGGACGCGCGAAAGACAGAG
AGGCTATCGCCGCGTATCTGGCGGGCGCAGGGCTGAAGACCTCGCCGGAGAACGTGCTGGTGGTGAGCGGCGCGCAGCAT
GGCCTTGCGGTGTCGGTGATGAGCCTTCTGCGCCCCGGCGATGTCGTGGCGGTGGACGCGCTGACTTACCCCGGTTTTAA
AGTGGCGGCACAACTTTGTCATGTTGAGCTGGTGGCGGTGCCGTTTACCCCGCAGGGGCCGGATCTCGGGGCGTTGCAGG
CGCTCTGCGAAAAGCGTCGTGTGCGGGCGGTTTACACGATGCCGACGCTGCACAACCCGATCGGCTGGGTCATGACGCCG
CGCCAGCGACGCGCGCTGGTGGCGATTGCACGGCAATACGATCTGTTGCTGATTGAAGATGCGCCTTACGCCTGGCTGGT
GAAACCCGCGCCGGTGCCGCTCGTGGCGCTGGCACCAGAAAGAACGGTGTATGTGACCGGGTTTTCGAAGAATATCGCGA
CGGGCTTGCGCGTGGGCGCGGTCGTCTGCCCGCCGCGTTTTCGGAGCGCGTTCGAACGAACCATCCGCGCCACCGCCTGG
AATACGCCTGCGCTGATGACCACGCTGGTCTGCAACTGGCTGCGTGACGGCACGGTAAACCGGTTTGAGGTGCTGAAGCG
CCGCGATGCGCGGGCGCGCCAGCGTCTTGCCAGGCAGGCGCTGGCTCCGCTTGAGGTGATGGGCAATCCGTCATCCTATT
TCCTCTGGCTGCCGCTGCGGGAAGGCGTCCGGGCCGAGCAAGTGGCGCAAAAACTGCTGCATAAAAAGATTTCGGTTTCG
ACCGCCGAGCCGTTCAGCGCATCACTTCATACACCCCACGCGATACGGCTCGCACTCGGCTCTTTACCGCTGGAGACACT
ACGGCAGGCGCTTGAAACGATCCGGGAAACGATACTGTATGAGGAAAATCTTTAG

Upstream 100 bases:

>100_bases
ATTTTCCATAACACTCTCCTGATAAATTGCGGCCATTGACGCCCGCCATCGTAGAGCGCTAGATTCATGACAATCAAAAA
ATTGTCATGGATACATTGCC

Downstream 100 bases:

>100_bases
AAGCCCGGAGAGGCGGCCTGCTGCCAACATCTTTGTTGCTCAGGCCGTAGCTTCGATAATACGCTCCCGGACGGTGTTGT
CGTATATTTTGTGTCCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKARYKTLVDRYASAIRSGELTAGVQLPTHRRLAAEHHVSLATATRVYAELEAMGLVSGETGRGTFVRDIALPPGLGIDQ
HAVAADALDLSFNYPALPGQAERLRDALRQLASAGDIEALLRYQPHAGRAKDREAIAAYLAGAGLKTSPENVLVVSGAQH
GLAVSVMSLLRPGDVVAVDALTYPGFKVAAQLCHVELVAVPFTPQGPDLGALQALCEKRRVRAVYTMPTLHNPIGWVMTP
RQRRALVAIARQYDLLLIEDAPYAWLVKPAPVPLVALAPERTVYVTGFSKNIATGLRVGAVVCPPRFRSAFERTIRATAW
NTPALMTTLVCNWLRDGTVNRFEVLKRRDARARQRLARQALAPLEVMGNPSSYFLWLPLREGVRAEQVAQKLLHKKISVS
TAEPFSASLHTPHAIRLALGSLPLETLRQALETIRETILYEENL

Sequences:

>Translated_444_residues
MKARYKTLVDRYASAIRSGELTAGVQLPTHRRLAAEHHVSLATATRVYAELEAMGLVSGETGRGTFVRDIALPPGLGIDQ
HAVAADALDLSFNYPALPGQAERLRDALRQLASAGDIEALLRYQPHAGRAKDREAIAAYLAGAGLKTSPENVLVVSGAQH
GLAVSVMSLLRPGDVVAVDALTYPGFKVAAQLCHVELVAVPFTPQGPDLGALQALCEKRRVRAVYTMPTLHNPIGWVMTP
RQRRALVAIARQYDLLLIEDAPYAWLVKPAPVPLVALAPERTVYVTGFSKNIATGLRVGAVVCPPRFRSAFERTIRATAW
NTPALMTTLVCNWLRDGTVNRFEVLKRRDARARQRLARQALAPLEVMGNPSSYFLWLPLREGVRAEQVAQKLLHKKISVS
TAEPFSASLHTPHAIRLALGSLPLETLRQALETIRETILYEENL
>Mature_444_residues
MKARYKTLVDRYASAIRSGELTAGVQLPTHRRLAAEHHVSLATATRVYAELEAMGLVSGETGRGTFVRDIALPPGLGIDQ
HAVAADALDLSFNYPALPGQAERLRDALRQLASAGDIEALLRYQPHAGRAKDREAIAAYLAGAGLKTSPENVLVVSGAQH
GLAVSVMSLLRPGDVVAVDALTYPGFKVAAQLCHVELVAVPFTPQGPDLGALQALCEKRRVRAVYTMPTLHNPIGWVMTP
RQRRALVAIARQYDLLLIEDAPYAWLVKPAPVPLVALAPERTVYVTGFSKNIATGLRVGAVVCPPRFRSAFERTIRATAW
NTPALMTTLVCNWLRDGTVNRFEVLKRRDARARQRLARQALAPLEVMGNPSSYFLWLPLREGVRAEQVAQKLLHKKISVS
TAEPFSASLHTPHAIRLALGSLPLETLRQALETIRETILYEENL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=179, Percent_Identity=27.9329608938547, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI33469970, Length=179, Percent_Identity=27.9329608938547, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=27.6824034334764, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1787710, Length=432, Percent_Identity=27.0833333333333, Blast_Score=129, Evalue=4e-31,
Organism=Drosophila melanogaster, GI21356535, Length=339, Percent_Identity=25.6637168141593, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48544; Mature: 48544

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARYKTLVDRYASAIRSGELTAGVQLPTHRRLAAEHHVSLATATRVYAELEAMGLVSGE
CCCHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
TGRGTFVRDIALPPGLGIDQHAVAADALDLSFNYPALPGQAERLRDALRQLASAGDIEAL
CCCCCEEEEECCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
LRYQPHAGRAKDREAIAAYLAGAGLKTSPENVLVVSGAQHGLAVSVMSLLRPGDVVAVDA
HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEC
LTYPGFKVAAQLCHVELVAVPFTPQGPDLGALQALCEKRRVRAVYTMPTLHNPIGWVMTP
CCCCCHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCEECC
RQRRALVAIARQYDLLLIEDAPYAWLVKPAPVPLVALAPERTVYVTGFSKNIATGLRVGA
HHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHHCCE
VVCPPRFRSAFERTIRATAWNTPALMTTLVCNWLRDGTVNRFEVLKRRDARARQRLARQA
EECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LAPLEVMGNPSSYFLWLPLREGVRAEQVAQKLLHKKISVSTAEPFSASLHTPHAIRLALG
CCCHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
SLPLETLRQALETIRETILYEENL
CCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKARYKTLVDRYASAIRSGELTAGVQLPTHRRLAAEHHVSLATATRVYAELEAMGLVSGE
CCCHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
TGRGTFVRDIALPPGLGIDQHAVAADALDLSFNYPALPGQAERLRDALRQLASAGDIEAL
CCCCCEEEEECCCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
LRYQPHAGRAKDREAIAAYLAGAGLKTSPENVLVVSGAQHGLAVSVMSLLRPGDVVAVDA
HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEC
LTYPGFKVAAQLCHVELVAVPFTPQGPDLGALQALCEKRRVRAVYTMPTLHNPIGWVMTP
CCCCCHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCEECC
RQRRALVAIARQYDLLLIEDAPYAWLVKPAPVPLVALAPERTVYVTGFSKNIATGLRVGA
HHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHHCCE
VVCPPRFRSAFERTIRATAWNTPALMTTLVCNWLRDGTVNRFEVLKRRDARARQRLARQA
EECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LAPLEVMGNPSSYFLWLPLREGVRAEQVAQKLLHKKISVSTAEPFSASLHTPHAIRLALG
CCCHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
SLPLETLRQALETIRETILYEENL
CCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]