| Definition | Ignicoccus hospitalis KIN4/I chromosome, complete genome. |
|---|---|
| Accession | NC_009776 |
| Length | 1,297,538 |
Click here to switch to the map view.
The map label for this gene is ykfD [H]
Identifier: 156938117
GI number: 156938117
Start: 1182914
End: 1183969
Strand: Direct
Name: ykfD [H]
Synonym: Igni_1330
Alternate gene names: 156938117
Gene position: 1182914-1183969 (Clockwise)
Preceding gene: 156938116
Following gene: 156938119
Centisome position: 91.17
GC content: 57.01
Gene sequence:
>1056_bases TTGCCGTTCGACCCGCTCCCCCCAGACACTGTCATGAAGACGGTAAACCTAAAGAAGTACTACCAAGTCGGAGGCCTCTT CGCCCCGAAGAGGGTCGTGAAGGCCGTGGACGGGGTCGACCTAAGCCTGAAGGACGAAGTCTACTGCATCGTAGGCGAGA GCGGGTGCGGGAAGAGCACCTTCGCCAGAGTTGTGGTCGGGCTGGAGGAGCCCACGGAAGGTGACGTCTTAATTAGAGTA AGGGACGAGACGGCGTCTATCTTAAAGATGATGGGAGAAAAGGTAAAGGGAAACACGGTTTCATACAAGCACTTGAGCCC CAAGGGGAAGAGGGTAGTAAAGAGAGAGATCCAGATGGTGTGGCAAGACCCCTACTCCAGCGTGGACCCCCGGATGAAAG TGTGGGAAGCCGTCGCCGAGCCCCTAATAATTCACAAGCTGGTAAAGGACAAGAAGGAAGCGAGGGAGAGGGCGATAGAG ATCTTGAAAAAGGTAAAGCTCCCGGAGGACGTAGCGGACCGCTACCCTCACCAGCTCTCGGGGGGCCAGAGGCAGAGGGT CGTGATAGCGAGGGCTCTGAGCGTCAACCCAAAGGTAATAGTGGCCGACGAGCCGGTCTCGATGCTAGACGTATCCATAA GGGCCGAAATAATAAACTTGATGAGGCAACTCCACGAGAGCGAGGGGACTAGCATGATAGTTATAACGCACGACTTGTCG ACCACTCCTCACTTGTGCGACCGCATAGGAATAATGTACTTGGGGAGGGTGGTAGAGGAGGGACCCACGCGCGAGGTTAT AGAGGACCCCCTACACCCGTACACCAAGGCATTGCTGGCAGCAGTGCTCGAGCCCGACCCGGAGAACAGGGAGAGGGAGC TGGTCGTTCCAATAAAGGGAGAGGTCAGCAGGCCCCCGGAGAGGGGCTGTAGGTTCTGGCCCCGTTGCGTCGCCTTAGAT ATGCACAAGGAGTTGGAGGGGCTGTGCAAGTACGAGGAGCCGGGATACTTCGTAAAGGGCGAGAGGAAGGTCGCTTGCTG GCTCCACAAGGGCTGA
Upstream 100 bases:
>100_bases ACCCGCTGGGCTCCTTGCTGTCTATAAAGAGGGCCGGCAGCGCGGGGCTGGGCAGGATTTAGGGGCCCTCCCGAAGGGCG GGCCCAGAGGTAAACGTTCG
Downstream 100 bases:
>100_bases GCTATCCTACCTCGAAGACTCCTAAGGTGAAGCCTATTGTCTTGTGTAGCTGGGGCAAGAACCACCTCCACCCCCTCCTC CCCCTGGGGGCCCCTACTTC
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MPFDPLPPDTVMKTVNLKKYYQVGGLFAPKRVVKAVDGVDLSLKDEVYCIVGESGCGKSTFARVVVGLEEPTEGDVLIRV RDETASILKMMGEKVKGNTVSYKHLSPKGKRVVKREIQMVWQDPYSSVDPRMKVWEAVAEPLIIHKLVKDKKEARERAIE ILKKVKLPEDVADRYPHQLSGGQRQRVVIARALSVNPKVIVADEPVSMLDVSIRAEIINLMRQLHESEGTSMIVITHDLS TTPHLCDRIGIMYLGRVVEEGPTREVIEDPLHPYTKALLAAVLEPDPENRERELVVPIKGEVSRPPERGCRFWPRCVALD MHKELEGLCKYEEPGYFVKGERKVACWLHKG
Sequences:
>Translated_351_residues MPFDPLPPDTVMKTVNLKKYYQVGGLFAPKRVVKAVDGVDLSLKDEVYCIVGESGCGKSTFARVVVGLEEPTEGDVLIRV RDETASILKMMGEKVKGNTVSYKHLSPKGKRVVKREIQMVWQDPYSSVDPRMKVWEAVAEPLIIHKLVKDKKEARERAIE ILKKVKLPEDVADRYPHQLSGGQRQRVVIARALSVNPKVIVADEPVSMLDVSIRAEIINLMRQLHESEGTSMIVITHDLS TTPHLCDRIGIMYLGRVVEEGPTREVIEDPLHPYTKALLAAVLEPDPENRERELVVPIKGEVSRPPERGCRFWPRCVALD MHKELEGLCKYEEPGYFVKGERKVACWLHKG >Mature_350_residues PFDPLPPDTVMKTVNLKKYYQVGGLFAPKRVVKAVDGVDLSLKDEVYCIVGESGCGKSTFARVVVGLEEPTEGDVLIRVR DETASILKMMGEKVKGNTVSYKHLSPKGKRVVKREIQMVWQDPYSSVDPRMKVWEAVAEPLIIHKLVKDKKEARERAIEI LKKVKLPEDVADRYPHQLSGGQRQRVVIARALSVNPKVIVADEPVSMLDVSIRAEIINLMRQLHESEGTSMIVITHDLST TPHLCDRIGIMYLGRVVEEGPTREVIEDPLHPYTKALLAAVLEPDPENRERELVVPIKGEVSRPPERGCRFWPRCVALDM HKELEGLCKYEEPGYFVKGERKVACWLHKG
Specific function: Part Of The Binding-Protein-Dependent Transport System For Dipeptides. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=255, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4505771, Length=255, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI9961252, Length=255, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI42741659, Length=246, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI215820660, Length=236, Percent_Identity=27.1186440677966, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI20143975, Length=236, Percent_Identity=27.1186440677966, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1789962, Length=341, Percent_Identity=39.8826979472141, Blast_Score=254, Evalue=5e-69, Organism=Escherichia coli, GI1787500, Length=313, Percent_Identity=41.85303514377, Blast_Score=244, Evalue=8e-66, Organism=Escherichia coli, GI145693107, Length=285, Percent_Identity=41.4035087719298, Blast_Score=204, Evalue=5e-54, Organism=Escherichia coli, GI1787758, Length=316, Percent_Identity=35.7594936708861, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1789963, Length=333, Percent_Identity=36.9369369369369, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI48994883, Length=296, Percent_Identity=37.1621621621622, Blast_Score=179, Evalue=3e-46, Organism=Escherichia coli, GI1789891, Length=251, Percent_Identity=39.0438247011952, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI1787547, Length=274, Percent_Identity=33.5766423357664, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787759, Length=323, Percent_Identity=33.1269349845201, Blast_Score=161, Evalue=7e-41, Organism=Escherichia coli, GI1788506, Length=281, Percent_Identity=32.7402135231317, Blast_Score=148, Evalue=5e-37, Organism=Escherichia coli, GI1787548, Length=301, Percent_Identity=29.2358803986711, Blast_Score=141, Evalue=8e-35, Organism=Escherichia coli, GI1786398, Length=286, Percent_Identity=32.5174825174825, Blast_Score=138, Evalue=6e-34, Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=36.6935483870968, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=35.4330708661417, Blast_Score=129, Evalue=4e-31, Organism=Escherichia coli, GI1789032, Length=289, Percent_Identity=31.8339100346021, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=31.9230769230769, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1788644, Length=228, Percent_Identity=34.6491228070175, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1787712, Length=249, Percent_Identity=31.7269076305221, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=32.9317269076305, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=31.4285714285714, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87081834, Length=252, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=29.6747967479675, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=31.9148936170213, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=33.4745762711864, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=29.6610169491525, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1789672, Length=284, Percent_Identity=29.5774647887324, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=33.0508474576271, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=34.5454545454545, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788450, Length=269, Percent_Identity=25.6505576208178, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786703, Length=256, Percent_Identity=28.90625, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=32.6923076923077, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786563, Length=264, Percent_Identity=29.5454545454545, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=28.9156626506024, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=271, Percent_Identity=27.6752767527675, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=26.3829787234043, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=31.1320754716981, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790525, Length=255, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI48995001, Length=290, Percent_Identity=28.2758620689655, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=27.5423728813559, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790534, Length=203, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787105, Length=208, Percent_Identity=31.7307692307692, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=26.2222222222222, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=28.1632653061224, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=23.7885462555066, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=25, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI48994943, Length=279, Percent_Identity=25.4480286738351, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788472, Length=293, Percent_Identity=24.9146757679181, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786698, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789593, Length=258, Percent_Identity=28.2945736434109, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788897, Length=224, Percent_Identity=24.5535714285714, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1790190, Length=242, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789991, Length=99, Percent_Identity=32.3232323232323, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788210, Length=221, Percent_Identity=28.9592760180996, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=228, Percent_Identity=24.5614035087719, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787041, Length=215, Percent_Identity=26.5116279069767, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786981, Length=222, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193202349, Length=253, Percent_Identity=27.6679841897233, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17558664, Length=276, Percent_Identity=28.6231884057971, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193209708, Length=230, Percent_Identity=31.304347826087, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=31.4410480349345, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17567265, Length=255, Percent_Identity=27.4509803921569, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=30, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567269, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71984940, Length=233, Percent_Identity=28.755364806867, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17541710, Length=260, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17543740, Length=258, Percent_Identity=24.4186046511628, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=265, Percent_Identity=26.7924528301887, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115535101, Length=238, Percent_Identity=30.2521008403361, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569145, Length=226, Percent_Identity=27.8761061946903, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510237, Length=235, Percent_Identity=24.6808510638298, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=261, Percent_Identity=26.8199233716475, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI85726357, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI24641565, Length=242, Percent_Identity=28.5123966942149, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24659289, Length=226, Percent_Identity=28.3185840707965, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 39629; Mature: 39498
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFDPLPPDTVMKTVNLKKYYQVGGLFAPKRVVKAVDGVDLSLKDEVYCIVGESGCGKST CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCHHH FARVVVGLEEPTEGDVLIRVRDETASILKMMGEKVKGNTVSYKHLSPKGKRVVKREIQMV HHHHHEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH WQDPYSSVDPRMKVWEAVAEPLIIHKLVKDKKEARERAIEILKKVKLPEDVADRYPHQLS HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCC GGQRQRVVIARALSVNPKVIVADEPVSMLDVSIRAEIINLMRQLHESEGTSMIVITHDLS CCCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC TTPHLCDRIGIMYLGRVVEEGPTREVIEDPLHPYTKALLAAVLEPDPENRERELVVPIKG CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC EVSRPPERGCRFWPRCVALDMHKELEGLCKYEEPGYFVKGERKVACWLHKG CCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEECC >Mature Secondary Structure PFDPLPPDTVMKTVNLKKYYQVGGLFAPKRVVKAVDGVDLSLKDEVYCIVGESGCGKST CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCHHH FARVVVGLEEPTEGDVLIRVRDETASILKMMGEKVKGNTVSYKHLSPKGKRVVKREIQMV HHHHHEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH WQDPYSSVDPRMKVWEAVAEPLIIHKLVKDKKEARERAIEILKKVKLPEDVADRYPHQLS HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCC GGQRQRVVIARALSVNPKVIVADEPVSMLDVSIRAEIINLMRQLHESEGTSMIVITHDLS CCCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC TTPHLCDRIGIMYLGRVVEEGPTREVIEDPLHPYTKALLAAVLEPDPENRERELVVPIKG CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC EVSRPPERGCRFWPRCVALDMHKELEGLCKYEEPGYFVKGERKVACWLHKG CCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]