Click here to switch to the map view.

The map label for this gene is 156938104

Identifier: 156938104

GI number: 156938104

Start: 1171675

End: 1172334

Strand: Reverse

Name: 156938104

Synonym: Igni_1317

Alternate gene names: NA

Gene position: 1172334-1171675 (Counterclockwise)

Preceding gene: 156938106

Following gene: 156938097

Centisome position: 90.35

GC content: 64.24

Gene sequence:

>660_bases
TTGCCGGGGCACGACGACCCTAGGTACTTGCTGGCTTGGTGGGGGCTGGAGAAGGTGGAGAGGGTGGTAAGGAACCCGGG
GAGGCCCATAGACAAGGGGAGGGCCAACGAGCTCTTGCGCGAGGCGTGGAGCGAGCTCAAGCGCTTGCGTTGGAGCGGCC
TCCCGGCGGAAATGGCCTCCCAGAGCGCCCCCGGTCTCTCCAAGCTGGCGTCGGAGCTTAAGGAGGTTTTGGGCTTGGGG
AGCGAGGAGAAGGACGAGCTGAGGGCGAGGGCCTCTTGGGCCTTGGGCTACCTCCAAGCGCTACCGACCCTCCTCAAGCT
CGGGGAGGAGGTGAGCCCGGGCAGGGCGGTCTTGGTCTTCTCCGGGCGAGTGTTGACGGTGAAGGACCACCCCAACGCGG
ACAAGTTGAAGGTGACTAGGACCGGTTTGGGGAAGGTAGCTATCACCGTCGTAACCAACATAAGTGAAGTGAAGGAGGGG
GAGGTGAGGGCAGTTGCGCTGCTCCCCCCAGCTGAGCTGAGGGGGGTGGTGAGCTGGGGGATGTTCTGCTCCGGGCCCTT
GGACTTGGAGGAGGGCAAGCCCTACCCCCCTTACGACGAGGGAGCAGTAGGCGCCCAAGTGGAGGCGCTCTTGAAGGAGG
CGACGAGGATCAAGAAGTGA

Upstream 100 bases:

>100_bases
TACGGAAAGGAACGCGTAAGGGAACATCAACTTCCGGGACCTAAGGGTTGAGGGACACAAACTAATACAAAAGTTCCGGG
CCGCGGGGAGGGACTCGACG

Downstream 100 bases:

>100_bases
GGAGCACTGACAAGGAGAAAACTATAACGACCAAGCTTATTATCATAGGCAGGTAATTCACCTCGAAAGGCGGGGGAGGG
GGCCCCGGGAGCTCCGCTTC

Product: tRNA-binding domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPGHDDPRYLLAWWGLEKVERVVRNPGRPIDKGRANELLREAWSELKRLRWSGLPAEMASQSAPGLSKLASELKEVLGLG
SEEKDELRARASWALGYLQALPTLLKLGEEVSPGRAVLVFSGRVLTVKDHPNADKLKVTRTGLGKVAITVVTNISEVKEG
EVRAVALLPPAELRGVVSWGMFCSGPLDLEEGKPYPPYDEGAVGAQVEALLKEATRIKK

Sequences:

>Translated_219_residues
MPGHDDPRYLLAWWGLEKVERVVRNPGRPIDKGRANELLREAWSELKRLRWSGLPAEMASQSAPGLSKLASELKEVLGLG
SEEKDELRARASWALGYLQALPTLLKLGEEVSPGRAVLVFSGRVLTVKDHPNADKLKVTRTGLGKVAITVVTNISEVKEG
EVRAVALLPPAELRGVVSWGMFCSGPLDLEEGKPYPPYDEGAVGAQVEALLKEATRIKK
>Mature_218_residues
PGHDDPRYLLAWWGLEKVERVVRNPGRPIDKGRANELLREAWSELKRLRWSGLPAEMASQSAPGLSKLASELKEVLGLGS
EEKDELRARASWALGYLQALPTLLKLGEEVSPGRAVLVFSGRVLTVKDHPNADKLKVTRTGLGKVAITVVTNISEVKEGE
VRAVALLPPAELRGVVSWGMFCSGPLDLEEGKPYPPYDEGAVGAQVEALLKEATRIKK

Specific function: Unknown

COG id: COG2517

COG function: function code R; Predicted RNA-binding protein containing a C-terminal EMAP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23936; Mature: 23805

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGHDDPRYLLAWWGLEKVERVVRNPGRPIDKGRANELLREAWSELKRLRWSGLPAEMAS
CCCCCCCCEEEEHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
QSAPGLSKLASELKEVLGLGSEEKDELRARASWALGYLQALPTLLKLGEEVSPGRAVLVF
CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
SGRVLTVKDHPNADKLKVTRTGLGKVAITVVTNISEVKEGEVRAVALLPPAELRGVVSWG
CCEEEEECCCCCCCCEEEEECCCCEEEEHEEHHHHHHCCCCEEEEEECCHHHHHHHHHHH
MFCSGPLDLEEGKPYPPYDEGAVGAQVEALLKEATRIKK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PGHDDPRYLLAWWGLEKVERVVRNPGRPIDKGRANELLREAWSELKRLRWSGLPAEMAS
CCCCCCCEEEEHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
QSAPGLSKLASELKEVLGLGSEEKDELRARASWALGYLQALPTLLKLGEEVSPGRAVLVF
CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
SGRVLTVKDHPNADKLKVTRTGLGKVAITVVTNISEVKEGEVRAVALLPPAELRGVVSWG
CCEEEEECCCCCCCCEEEEECCCCEEEEHEEHHHHHHCCCCEEEEEECCHHHHHHHHHHH
MFCSGPLDLEEGKPYPPYDEGAVGAQVEALLKEATRIKK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA