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The map label for this gene is rpl18p

Identifier: 156938064

GI number: 156938064

Start: 1137013

End: 1137627

Strand: Reverse

Name: rpl18p

Synonym: Igni_1277

Alternate gene names: 156938064

Gene position: 1137627-1137013 (Counterclockwise)

Preceding gene: 156938065

Following gene: 156938063

Centisome position: 87.68

GC content: 58.21

Gene sequence:

>615_bases
TTGGCAAGGGGGCCTAGGTACAAAGTTCCCAGAAGGAGGAGAAGGGAAGGGAAGACCAACTACTACAAGCGTTACACCAT
GGCGCTCTCGAGGAAGCCCAGGTTCGTGGTGAGGAAGAGCAACAAGTACGTGTGGGTACAAGTGATCGAGTTCGCCCCCG
AAGGGGACAAGGTCATAGCCGCTGCGCACTCGAAGGAGCTCGAGAAGAAGTACGGCTGGAAGGGCTACGGCAACTCCTTG
CCCGCCGTCTACTTGACCGGCATGTTAGCGGCCTTGCGGGCGAAGAAGGCCGGAATACAATACGCGGTCCCGGACATAGG
CTTACACAAGCCCACTAAGGGCGCCAGAGTGTTTGCGGCGATAAAGGCGGCCAACGACGTCGGGCTAGAGGTGCCCGTGG
GAGACGTGGTCCCCGACGAGAGCAGGATAAGGGGCGAACACATAGCTTCCTACGCGGAGAGCTTGAAGAACGAGAACCCG
GAAGAGTACCAGAGGAGGTTCGCCAAGTTGCTGGAAAGGGGCCTCAAACCGGAGGACTACCCGAAGCACTTCGAAGAAGT
GAAGGCAAAGATACTCGAAGACTATAAGGTGGAGCAGCCCGCCACCACGGGGTGA

Upstream 100 bases:

>100_bases
TACAGAGAGCTATACATGAAGGCTAAAGGTGGCATGTTCGATAGCTTAAGTAACTTAAAGACCTACTTGAGGGAGAGGTA
CGGCATAGAGGTGAAGTGAG

Downstream 100 bases:

>100_bases
CGCGAAGTGGCGGTGACCGTTTCCGCGGAGGAGTGGGTCCCGAGGACCAGAGTAGGGAGGATGGTTAAGGAAGGCAAGAT
AACTAGCATATACGAGCTCT

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MARGPRYKVPRRRRREGKTNYYKRYTMALSRKPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSL
PAVYLTGMLAALRAKKAGIQYAVPDIGLHKPTKGARVFAAIKAANDVGLEVPVGDVVPDESRIRGEHIASYAESLKNENP
EEYQRRFAKLLERGLKPEDYPKHFEEVKAKILEDYKVEQPATTG

Sequences:

>Translated_204_residues
MARGPRYKVPRRRRREGKTNYYKRYTMALSRKPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSL
PAVYLTGMLAALRAKKAGIQYAVPDIGLHKPTKGARVFAAIKAANDVGLEVPVGDVVPDESRIRGEHIASYAESLKNENP
EEYQRRFAKLLERGLKPEDYPKHFEEVKAKILEDYKVEQPATTG
>Mature_203_residues
ARGPRYKVPRRRRREGKTNYYKRYTMALSRKPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLP
AVYLTGMLAALRAKKAGIQYAVPDIGLHKPTKGARVFAAIKAANDVGLEVPVGDVVPDESRIRGEHIASYAESLKNENPE
EYQRRFAKLLERGLKPEDYPKHFEEVKAKILEDYKVEQPATTG

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

Organism=Homo sapiens, GI14591909, Length=237, Percent_Identity=28.6919831223629, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17534333, Length=236, Percent_Identity=33.8983050847458, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6325126, Length=241, Percent_Identity=32.3651452282158, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI116007384, Length=237, Percent_Identity=32.4894514767932, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI116007382, Length=237, Percent_Identity=32.4894514767932, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_IGNH4 (A8AC01)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435860.1
- ProteinModelPortal:   A8AC01
- SMR:   A8AC01
- STRING:   A8AC01
- GeneID:   5562905
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1277
- eggNOG:   arNOG08828
- HOGENOM:   HBG391676
- OMA:   GNTPSAY
- ProtClustDB:   PRK08569
- BioCyc:   IHOS453591:IGNI_1277-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_A
- InterPro:   IPR005484
- InterPro:   IPR005485
- PANTHER:   PTHR23410

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 23236; Mature: 23105

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGPRYKVPRRRRREGKTNYYKRYTMALSRKPRFVVRKSNKYVWVQVIEFAPEGDKVIA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEEECCCCCEEEE
AAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKKAGIQYAVPDIGLHKPTKGARVFAA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHH
IKAANDVGLEVPVGDVVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDY
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH
PKHFEEVKAKILEDYKVEQPATTG
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ARGPRYKVPRRRRREGKTNYYKRYTMALSRKPRFVVRKSNKYVWVQVIEFAPEGDKVIA
CCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEEECCCCCEEEE
AAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKKAGIQYAVPDIGLHKPTKGARVFAA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHH
IKAANDVGLEVPVGDVVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDY
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH
PKHFEEVKAKILEDYKVEQPATTG
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA