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The map label for this gene is rfaE [C]

Identifier: 156937829

GI number: 156937829

Start: 928545

End: 929225

Strand: Reverse

Name: rfaE [C]

Synonym: Igni_1040

Alternate gene names: 156937829

Gene position: 929225-928545 (Counterclockwise)

Preceding gene: 156937830

Following gene: 156937828

Centisome position: 71.61

GC content: 58.0

Gene sequence:

>681_bases
TTGAGCTGCGAGAGGGCCGCGAAGTATTTGAACAACCTGAAGGGAGTAATTAGCAATATTAAGTATTCTCCCGAAGCGAG
CGAGGTGGTGGACCTAGCCAAGAGGTACGTGGAGGACACCGAGTACTACTTGAACTCCGGAGACTGCGAGACCGCGCTGG
TGACGGCTTCCTACGCCGAGGGCTTGTTAGACGCCTTAAGGATGATAGGAAAGGCCGAGTTCGAGTGGAAGAGGGAGAGG
AGGAAGAGGGTCTTCGTCGGCGGGACCTTCGACATCGTGCACCCCGGACACGTGGAGCTGTTGAAGGAGGCCTCCAAGCT
CGGCGACGTCATAGTTGTGGTCGCTAGGGACGAGACCGTGAAGAGGCTGAAGGGGAGGGGGCCGGTGGTGCCCCAAGAGC
AGAGGAGGTACGTGGTGGGCAGCTTGAAGTACGTCAAGGAGGCTTACGTGGGCGGGGAGGACCCGATAGAGACCGTAGTC
AAGCTCAAGCCGGACGTCATCTTCTTGGGCCCCGACCAGACGTGGGACGAGGAGGAGCTGAAGGAGGAGCTGAGGAAGAG
GGGGCTGGAGGTGGAAGTGGTGAGGATGAAGGAGAAGAGGTGCATACCCGGCGGCCTCTGCTCTTCAAGCTTAATAATTA
AGAAGGTGTTGGAGGAGTTCTGTGACGGCGAGGGCTATTAA

Upstream 100 bases:

>100_bases
AGTTGGACCCCAAGGAGGTGGAGGAGCGGCTGAGGGCGCTGGAGGGGGTCTCGGAGGCCTCAGCGGTTAAGGTTCCCCAG
CCAAGCCCCTCGGAGAGAGC

Downstream 100 bases:

>100_bases
AGCACGAGGTAGAGAAGCTAGGGGGCGCGCGTTTTGGACCTAACCGAGTTGGTGCGCCAGAGCTTGGCTGACCCGTGGAA
GCCCCTGGGGACTTACGTCA

Product: cytidyltransferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSCERAAKYLNNLKGVISNIKYSPEASEVVDLAKRYVEDTEYYLNSGDCETALVTASYAEGLLDALRMIGKAEFEWKRER
RKRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETVKRLKGRGPVVPQEQRRYVVGSLKYVKEAYVGGEDPIETVV
KLKPDVIFLGPDQTWDEEELKEELRKRGLEVEVVRMKEKRCIPGGLCSSSLIIKKVLEEFCDGEGY

Sequences:

>Translated_226_residues
MSCERAAKYLNNLKGVISNIKYSPEASEVVDLAKRYVEDTEYYLNSGDCETALVTASYAEGLLDALRMIGKAEFEWKRER
RKRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETVKRLKGRGPVVPQEQRRYVVGSLKYVKEAYVGGEDPIETVV
KLKPDVIFLGPDQTWDEEELKEELRKRGLEVEVVRMKEKRCIPGGLCSSSLIIKKVLEEFCDGEGY
>Mature_225_residues
SCERAAKYLNNLKGVISNIKYSPEASEVVDLAKRYVEDTEYYLNSGDCETALVTASYAEGLLDALRMIGKAEFEWKRERR
KRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETVKRLKGRGPVVPQEQRRYVVGSLKYVKEAYVGGEDPIETVVK
LKPDVIFLGPDQTWDEEELKEELRKRGLEVEVVRMKEKRCIPGGLCSSSLIIKKVLEEFCDGEGY

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0615

COG function: function code MI; Cytidylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789432, Length=146, Percent_Identity=36.986301369863, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004821
- InterPro:   IPR004820
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01467 CTP_transf_2 [H]

EC number: 2.7.-.- [C]

Molecular weight: Translated: 25534; Mature: 25402

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCERAAKYLNNLKGVISNIKYSPEASEVVDLAKRYVEDTEYYLNSGDCETALVTASYAE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GLLDALRMIGKAEFEWKRERRKRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETV
HHHHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCHHHHHHHHHHCCCEEEEEECCHHH
KRLKGRGPVVPQEQRRYVVGSLKYVKEAYVGGEDPIETVVKLKPDVIFLGPDQTWDEEEL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCHHHH
KEELRKRGLEVEVVRMKEKRCIPGGLCSSSLIIKKVLEEFCDGEGY
HHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SCERAAKYLNNLKGVISNIKYSPEASEVVDLAKRYVEDTEYYLNSGDCETALVTASYAE
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GLLDALRMIGKAEFEWKRERRKRVFVGGTFDIVHPGHVELLKEASKLGDVIVVVARDETV
HHHHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCHHHHHHHHHHCCCEEEEEECCHHH
KRLKGRGPVVPQEQRRYVVGSLKYVKEAYVGGEDPIETVVKLKPDVIFLGPDQTWDEEEL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCHHHH
KEELRKRGLEVEVVRMKEKRCIPGGLCSSSLIIKKVLEEFCDGEGY
HHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]