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The map label for this gene is 156937769

Identifier: 156937769

GI number: 156937769

Start: 870591

End: 870812

Strand: Direct

Name: 156937769

Synonym: Igni_0978

Alternate gene names: NA

Gene position: 870591-870812 (Clockwise)

Preceding gene: 156937768

Following gene: 156937770

Centisome position: 67.1

GC content: 53.15

Gene sequence:

>222_bases
ATGGCGGACACGGCCCACAAGGTGATGGCAGAGGCAATAGGCAAGATAGTACTAGTCAAACTGAGGGACGGTAAGGTCAG
GGGGAGGCTGAAGACCTTCGACATGCACTTGAACATAGTCTTGGAGGATGCCGAGGAGGTCAGGGAAGACCAGACGAGGC
CCTTAGGAACAATATTAATCAGAGGAGACGGCGTAGTCTTCGTATCTCCAGTGGAGGTGTGA

Upstream 100 bases:

>100_bases
GTGGAAAATTGTGGTTAAAGATATTAAACAATTTCTGAAGGAGAAGAACTGAGCGCGAATGTGATTTAAAACGTAGCTCG
CAGGCGGTCCGGGAGGTCAT

Downstream 100 bases:

>100_bases
GGCCATGAGCAAGGGCACTCCCTCGTTCGGCAAGCACAACAAGGGCAAGACCCACATAAGGTGTAGGAGGTGCGGCAGAC
ACTCGTTCAACGTTAGGAAG

Product: like-Sm ribonucleoprotein, core

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MADTAHKVMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEVREDQTRPLGTILIRGDGVVFVSPVEV

Sequences:

>Translated_73_residues
MADTAHKVMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEVREDQTRPLGTILIRGDGVVFVSPVEV
>Mature_72_residues
ADTAHKVMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEVREDQTRPLGTILIRGDGVVFVSPVEV

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8098; Mature: 7966

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTAHKVMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEVREDQTRPLGTILI
CCCHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEEEEEEEEECHHHHHHCCCCCEEEEEE
RGDGVVFVSPVEV
CCCCEEEEEEECC
>Mature Secondary Structure 
ADTAHKVMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEVREDQTRPLGTILI
CCHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEEEEEEEEECHHHHHHCCCCCEEEEEE
RGDGVVFVSPVEV
CCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA