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The map label for this gene is rpoM [H]

Identifier: 156937645

GI number: 156937645

Start: 755566

End: 755907

Strand: Reverse

Name: rpoM [H]

Synonym: Igni_0852

Alternate gene names: 156937645

Gene position: 755907-755566 (Counterclockwise)

Preceding gene: 156937650

Following gene: 156937644

Centisome position: 58.26

GC content: 54.39

Gene sequence:

>342_bases
TTGAGGTTCTGCCCTAAGTGCGGCTCGCTGATGGTGGCCAGGAGGGTGGGCGGCAAGACTATATTGAAATGTATGAGGTG
TGGCTACGAGATGGAGGTTACCGGGGCGCAGAGCACCTTAAGGACTGCAAAGAAGATAAGGCACAGTGTAAAGGAGAAGA
CAGTTGTAATTGACAACAATATAAAAGTTGAGACCCTCCCGAAGACCAGAGACGTCATATGCCCCAAGTGCGGCCACGAC
GAGGCGTACTACTGGTTCGTACAGACGAGGGCCGGAGACGAGCCGCCCACGAGGTTCTACAAGTGCACGAGGTGCGGGCA
CGTATGGAGAGAGTACGAGTGA

Upstream 100 bases:

>100_bases
GCTCAAGCCCCCGCACGAGGGCGTCGGAGCGCTATTCAAGCTGCGTCGCTGTTTAAGCAATAAACCTCTGAGCGTCGTTC
CGCAGCCGGTGGTCGAGAAG

Downstream 100 bases:

>100_bases
TCGAGAAGGTGTTGTTGAAGGCGATGGAAGAGGTGGAGGGGGCCTACCTGAGGTCCCCTCCCCACTGGAGCGGGAGGCTG
AACGCCTTCAGGGCGCTACA

Product: DNA-directed RNA polymerase, subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRFCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNNIKVETLPKTRDVICPKCGHD
EAYYWFVQTRAGDEPPTRFYKCTRCGHVWREYE

Sequences:

>Translated_113_residues
MRFCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNNIKVETLPKTRDVICPKCGHD
EAYYWFVQTRAGDEPPTRFYKCTRCGHVWREYE
>Mature_113_residues
MRFCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNNIKVETLPKTRDVICPKCGHD
EAYYWFVQTRAGDEPPTRFYKCTRCGHVWREYE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Homo sapiens, GI5453930, Length=115, Percent_Identity=33.0434782608696, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320250, Length=115, Percent_Identity=35.6521739130435, Blast_Score=64, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24646802, Length=115, Percent_Identity=35.6521739130435, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI78707272, Length=113, Percent_Identity=34.5132743362832, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 13094; Mature: 13094

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
7.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNN
CCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCEEEECCC
IKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCTRCGHVWREYE
EEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVIDNN
CCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCEEEECCC
IKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCTRCGHVWREYE
EEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8502569 [H]