Click here to switch to the map view.

The map label for this gene is 156937643

Identifier: 156937643

GI number: 156937643

Start: 754867

End: 755424

Strand: Reverse

Name: 156937643

Synonym: Igni_0850

Alternate gene names: NA

Gene position: 755424-754867 (Counterclockwise)

Preceding gene: 156937644

Following gene: 156937642

Centisome position: 58.22

GC content: 53.76

Gene sequence:

>558_bases
GTGCTGAGGGCCTTCATAGCGGTGGACATAGAGGGGGAATTGAGCGAGAAGCTAGCCAGGCTCGCGGAGTCCTTAAAGAG
CACGGGAGCTGACGTGAAGCTCGTAGAAAAGGAGAACTTCCACATCACTATAAGGTTCTTGGGCAACGTACCCGAGGAGA
GCATAGATGTAATAGAAAAGATAATGAGAGACGCAGTAAGAGAGGTTAAGCCGCACAAGCTCAAGCTCAGGGGAGTTGGG
GCCTTCCCCAGCCCCGAGAGGCCGAGGGTCGTGTGGGTCGGGGTTGAGGGAGATGAGGAGCTGAGGAAGATATTCGAAAG
GATAGAAAGGGAGCTGAGGAGGTTGGGCTTTAAGCCCGAGACCAAAGGCTTTACCGCCCACGTGACCTTAGCTAGGGTTA
GGAGCGGGAGGGGTAGGGAAGCTCTGGTGAAGTGGATTAACGACATGAAGGACGTAGAGCTAGGAGAGCTCGAGGTAAAG
AGCATAAGGCTGAAGAAGAGTACCTTGACGCCTAGGGGACCAATTTACGAGACGTTGAGAGAGGTAGAGCTGGCTTGA

Upstream 100 bases:

>100_bases
GCCTACCTGAGGTCCCCTCCCCACTGGAGCGGGAGGCTGAACGCCTTCAGGGCGCTACAGCTCTTACGCTCGGCCCTAGA
CCTCCTGGGGGAGCTGAAGC

Downstream 100 bases:

>100_bases
CCCCCTCCCGCTCCGAAGTAGAGAGGGAGGTCCTCGAGGAGCTTAGGCCTACGCGAGAGGAGGTGAGGCTGAGGGACGAG
CTGTTCGTTAAAACGAAAAG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MLRAFIAVDIEGELSEKLARLAESLKSTGADVKLVEKENFHITIRFLGNVPEESIDVIEKIMRDAVREVKPHKLKLRGVG
AFPSPERPRVVWVGVEGDEELRKIFERIERELRRLGFKPETKGFTAHVTLARVRSGRGREALVKWINDMKDVELGELEVK
SIRLKKSTLTPRGPIYETLREVELA

Sequences:

>Translated_185_residues
MLRAFIAVDIEGELSEKLARLAESLKSTGADVKLVEKENFHITIRFLGNVPEESIDVIEKIMRDAVREVKPHKLKLRGVG
AFPSPERPRVVWVGVEGDEELRKIFERIERELRRLGFKPETKGFTAHVTLARVRSGRGREALVKWINDMKDVELGELEVK
SIRLKKSTLTPRGPIYETLREVELA
>Mature_185_residues
MLRAFIAVDIEGELSEKLARLAESLKSTGADVKLVEKENFHITIRFLGNVPEESIDVIEKIMRDAVREVKPHKLKLRGVG
AFPSPERPRVVWVGVEGDEELRKIFERIERELRRLGFKPETKGFTAHVTLARVRSGRGREALVKWINDMKDVELGELEVK
SIRLKKSTLTPRGPIYETLREVELA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21151; Mature: 21151

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAFIAVDIEGELSEKLARLAESLKSTGADVKLVEKENFHITIRFLGNVPEESIDVIEK
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
IMRDAVREVKPHKLKLRGVGAFPSPERPRVVWVGVEGDEELRKIFERIERELRRLGFKPE
HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
TKGFTAHVTLARVRSGRGREALVKWINDMKDVELGELEVKSIRLKKSTLTPRGPIYETLR
CCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCEEHHHEEEECCCCCCCCHHHHHHH
EVELA
HHCCC
>Mature Secondary Structure
MLRAFIAVDIEGELSEKLARLAESLKSTGADVKLVEKENFHITIRFLGNVPEESIDVIEK
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
IMRDAVREVKPHKLKLRGVGAFPSPERPRVVWVGVEGDEELRKIFERIERELRRLGFKPE
HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
TKGFTAHVTLARVRSGRGREALVKWINDMKDVELGELEVKSIRLKKSTLTPRGPIYETLR
CCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCEEHHHEEEECCCCCCCCHHHHHHH
EVELA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]