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The map label for this gene is rpl40e

Identifier: 156937631

GI number: 156937631

Start: 744100

End: 744267

Strand: Reverse

Name: rpl40e

Synonym: Igni_0838

Alternate gene names: 156937631

Gene position: 744267-744100 (Counterclockwise)

Preceding gene: 156937635

Following gene: 156937630

Centisome position: 57.36

GC content: 57.74

Gene sequence:

>168_bases
GTGCCCGTAACTGACCCCGAATTGGTAGCGATCGTGCAAAAGAGGGTGCTCAAGAAGTACGTGTGTAGGAAGTGCGGCGC
CCTTAACCCGTGGGGAGCGACGAAGTGTAGGAGGTGCAAGAGCACCAACCTCAGGCCGAAGCACTACGAGCTCGGAGGCA
AGAGGTAA

Upstream 100 bases:

>100_bases
GCCGCGTGCCCAAGGGGGAATTCGGAGGTCCGGGTTAATGATGGGCGACGTTGGAGAAAATATAACTTTGCCCGAGCGCG
CGTGTGCGGGGTGAACGGAA

Downstream 100 bases:

>100_bases
TGCGGTTTGACGTTCACCCTAGATGATCTAATATACGTAATGAAGAAGTTACAGGAGGCCGGGCTGGACGCGGTAATAAT
AGGCGGGACCTCCGTCGAGT

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 55; Mature: 54

Protein sequence:

>55_residues
MPVTDPELVAIVQKRVLKKYVCRKCGALNPWGATKCRRCKSTNLRPKHYELGGKR

Sequences:

>Translated_55_residues
MPVTDPELVAIVQKRVLKKYVCRKCGALNPWGATKCRRCKSTNLRPKHYELGGKR
>Mature_54_residues
PVTDPELVAIVQKRVLKKYVCRKCGALNPWGATKCRRCKSTNLRPKHYELGGKR

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_IGNH4 (A8AAR8)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435427.1
- ProteinModelPortal:   A8AAR8
- SMR:   A8AAR8
- STRING:   A8AAR8
- GeneID:   5563136
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0838
- eggNOG:   arNOG18330
- HOGENOM:   HBG391745
- OMA:   SKNLRPK
- ProtClustDB:   PRK04136
- BioCyc:   IHOS453591:IGNI_0838-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 6299; Mature: 6167

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
7.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTDPELVAIVQKRVLKKYVCRKCGALNPWGATKCRRCKSTNLRPKHYELGGKR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PVTDPELVAIVQKRVLKKYVCRKCGALNPWGATKCRRCKSTNLRPKHYELGGKR
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA