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The map label for this gene is fni

Identifier: 156937597

GI number: 156937597

Start: 711954

End: 713036

Strand: Reverse

Name: fni

Synonym: Igni_0804

Alternate gene names: 156937597

Gene position: 713036-711954 (Counterclockwise)

Preceding gene: 156937599

Following gene: 156937596

Centisome position: 54.95

GC content: 56.88

Gene sequence:

>1083_bases
TTGGAAACGTCGAACAGGAAGCTTGACCACTTACGGATAACCCTCCTCGAGGACGTCGAGGCCGGCGACACGTGGTTGGA
CTTCGTCAAAGTCCCTCACAGAGCCGTGCCGGAGCTTAACCTAGAGGAGGTGGTCACTGAAATAGAAGTCTTCGGGAAGA
AGTTGAGCGCGCCTCTCATAGTAACCGGCATGACCGGGGGCAACGAACACGCAGCTAAGATCAACGCCGTCATCGCTGAG
GTCGTAGAAGAGCTGGGGTTGGGCATGGGGGTGGGGAGCCAGAGGGCAGCGGTCGAGAGGCCGGAGCTGGAGTGGACCTT
CAGGATAGCCCGAGAAAGGGCCCCCAACGCGCTGTTAATAGCCAACTTGGGCGCGCCGCAGCTGCTCAAGGGCTACGGCT
TAGAAGAGATAAAGAAAGCTATAGATATGATAGACGCCGACGCCATAGCTATTCACTTGAACGCCGCCCAGGAGTCATTC
CAACCGGAAGGCGACGTAGATTACAAAGGGTTGCTGAACAAGCTCTCTGAACTAGTAGACAAGGTGGAGAAGCCAATAAT
AATAAAGGAGACGGGAGCGGGCTTGGACTACGAAAGCGTGAAGGCTCTTAGGGAGCTCGGAATAAAGGCCTTCGACGTCT
CCGGCTCCGGGGGGACGAGCTGGGTGAGGGTGGAGATGTACCGAGCGAGGGAGAAGGGCGACGAAGTGCTAGCGACTGTG
GCTGACTGGATGTCCTCTTGGGGGATCCCGACGGCCGCGTCGATAATGGAGGCCAGAGCCGCCGCGCCGGACGCCTTAGT
AATAGCTTCGGGAGGCATAAGGGACGGCCTACACGCCGTAAAGTCGTTAGCCCTCGGGGCCGACTTGGTCGGAGTAGCCT
TGCCCGCCCTCAAGGCGGCTTATGAGGGGAAAGAAGAATTGAAAAAGTTCTTGAAATCTATGATGCTATCAATAAAGATA
GGCTTGTTCTTGACGGGAAGCCCCGCCCCGGAGCACATAAAGGGCAAGGCAATAGTGTTAGGCCCGTTGAAGGAGTGGGC
GTTGGAGAGGGGAATATACGAAGAGTGGTTGAGGGCGCGCTGA

Upstream 100 bases:

>100_bases
ACCACGGTCTCCTTAGTCCTCCTCTCCAAGGCTTGAGCCCCGGGACTGCGAGAACCAGTAAAATAGAGCGTTTTTGTGTA
AAAGGCGGGCTGGTGCGAAG

Downstream 100 bases:

>100_bases
CGAGCTAACCCAAGAGAAAATTAATTACCGACCGGTCGGGAACTCCCGCGGGTTTAGGGATTGGTCATTGTCGCCGTGAG
CTTTTTGATACTGGCATGCG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
METSNRKLDHLRITLLEDVEAGDTWLDFVKVPHRAVPELNLEEVVTEIEVFGKKLSAPLIVTGMTGGNEHAAKINAVIAE
VVEELGLGMGVGSQRAAVERPELEWTFRIARERAPNALLIANLGAPQLLKGYGLEEIKKAIDMIDADAIAIHLNAAQESF
QPEGDVDYKGLLNKLSELVDKVEKPIIIKETGAGLDYESVKALRELGIKAFDVSGSGGTSWVRVEMYRAREKGDEVLATV
ADWMSSWGIPTAASIMEARAAAPDALVIASGGIRDGLHAVKSLALGADLVGVALPALKAAYEGKEELKKFLKSMMLSIKI
GLFLTGSPAPEHIKGKAIVLGPLKEWALERGIYEEWLRAR

Sequences:

>Translated_360_residues
METSNRKLDHLRITLLEDVEAGDTWLDFVKVPHRAVPELNLEEVVTEIEVFGKKLSAPLIVTGMTGGNEHAAKINAVIAE
VVEELGLGMGVGSQRAAVERPELEWTFRIARERAPNALLIANLGAPQLLKGYGLEEIKKAIDMIDADAIAIHLNAAQESF
QPEGDVDYKGLLNKLSELVDKVEKPIIIKETGAGLDYESVKALRELGIKAFDVSGSGGTSWVRVEMYRAREKGDEVLATV
ADWMSSWGIPTAASIMEARAAAPDALVIASGGIRDGLHAVKSLALGADLVGVALPALKAAYEGKEELKKFLKSMMLSIKI
GLFLTGSPAPEHIKGKAIVLGPLKEWALERGIYEEWLRAR
>Mature_360_residues
METSNRKLDHLRITLLEDVEAGDTWLDFVKVPHRAVPELNLEEVVTEIEVFGKKLSAPLIVTGMTGGNEHAAKINAVIAE
VVEELGLGMGVGSQRAAVERPELEWTFRIARERAPNALLIANLGAPQLLKGYGLEEIKKAIDMIDADAIAIHLNAAQESF
QPEGDVDYKGLLNKLSELVDKVEKPIIIKETGAGLDYESVKALRELGIKAFDVSGSGGTSWVRVEMYRAREKGDEVLATV
ADWMSSWGIPTAASIMEARAAAPDALVIASGGIRDGLHAVKSLALGADLVGVALPALKAAYEGKEELKKFLKSMMLSIKI
GLFLTGSPAPEHIKGKAIVLGPLKEWALERGIYEEWLRAR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_IGNH4 (A8AAN4)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435393.1
- ProteinModelPortal:   A8AAN4
- SMR:   A8AAN4
- STRING:   A8AAN4
- GeneID:   5562641
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0804
- eggNOG:   arNOG04310
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   IHOS453591:IGNI_0804-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38988; Mature: 38988

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METSNRKLDHLRITLLEDVEAGDTWLDFVKVPHRAVPELNLEEVVTEIEVFGKKLSAPLI
CCCCCCCHHHEEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
VTGMTGGNEHAAKINAVIAEVVEELGLGMGVGSQRAAVERPELEWTFRIARERAPNALLI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEE
ANLGAPQLLKGYGLEEIKKAIDMIDADAIAIHLNAAQESFQPEGDVDYKGLLNKLSELVD
EECCCHHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCHHHHHHHHHHHHH
KVEKPIIIKETGAGLDYESVKALRELGIKAFDVSGSGGTSWVRVEMYRAREKGDEVLATV
HHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEHHHHHHCHHHHHHHH
ADWMSSWGIPTAASIMEARAAAPDALVIASGGIRDGLHAVKSLALGADLVGVALPALKAA
HHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
YEGKEELKKFLKSMMLSIKIGLFLTGSPAPEHIKGKAIVLGPLKEWALERGIYEEWLRAR
HCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHCCCEEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
METSNRKLDHLRITLLEDVEAGDTWLDFVKVPHRAVPELNLEEVVTEIEVFGKKLSAPLI
CCCCCCCHHHEEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
VTGMTGGNEHAAKINAVIAEVVEELGLGMGVGSQRAAVERPELEWTFRIARERAPNALLI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEEE
ANLGAPQLLKGYGLEEIKKAIDMIDADAIAIHLNAAQESFQPEGDVDYKGLLNKLSELVD
EECCCHHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCHHHHHHHHHHHHH
KVEKPIIIKETGAGLDYESVKALRELGIKAFDVSGSGGTSWVRVEMYRAREKGDEVLATV
HHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEHHHHHHCHHHHHHHH
ADWMSSWGIPTAASIMEARAAAPDALVIASGGIRDGLHAVKSLALGADLVGVALPALKAA
HHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
YEGKEELKKFLKSMMLSIKIGLFLTGSPAPEHIKGKAIVLGPLKEWALERGIYEEWLRAR
HCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHCCCEEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA