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The map label for this gene is rpl21e

Identifier: 156937571

GI number: 156937571

Start: 693429

End: 693728

Strand: Direct

Name: rpl21e

Synonym: Igni_0778

Alternate gene names: 156937571

Gene position: 693429-693728 (Clockwise)

Preceding gene: 156937569

Following gene: 156937572

Centisome position: 53.44

GC content: 55.67

Gene sequence:

>300_bases
TTGGTAAAGGCCCCGAAGGGGTGGAGGCACAGAACTAGGCACATTTATAGAAAAAGGGTGAGGGAGAAGGGCGCTGTTCC
CCCGCTGAGCTTGGTGCTGATCGACTACAAGCCGGGCGACAAGGTGATAATAGACCCGAACCCGGCAATATGGTCGGGCT
TGCCCCACAGGAGGTTCTGCGGGAAGGTGGGCGAAGTGGTGGGCAAGCGAGGAAAGGCGTACCTAGTGAAGGTCAGGGAC
GGCGACGTATACAAGACCATAATAGTTCGTCCAGAACACCTAAGGCCTTTCAAGCAGTAA

Upstream 100 bases:

>100_bases
CTCCTCGCTCAAGCCTTGGTAACTCGCGCGCAGTACGTTCAAGACTCGCCCCCTCAAAGGGTTTTAACCTTCCTCATTAA
TCCTGCCGGGTGATGAGGAC

Downstream 100 bases:

>100_bases
AAGGGTAGCTCTCCCCTCCTCCGTGGTAGGTAAGGGTTGACCCTTACGTGCATTAGCGTTGAAGAGAAGTTCCCCGCCGC
CCACTATACCAACCCCCGTC

Product: 50S ribosomal protein L21E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MVKAPKGWRHRTRHIYRKRVREKGAVPPLSLVLIDYKPGDKVIIDPNPAIWSGLPHRRFCGKVGEVVGKRGKAYLVKVRD
GDVYKTIIVRPEHLRPFKQ

Sequences:

>Translated_99_residues
MVKAPKGWRHRTRHIYRKRVREKGAVPPLSLVLIDYKPGDKVIIDPNPAIWSGLPHRRFCGKVGEVVGKRGKAYLVKVRD
GDVYKTIIVRPEHLRPFKQ
>Mature_99_residues
MVKAPKGWRHRTRHIYRKRVREKGAVPPLSLVLIDYKPGDKVIIDPNPAIWSGLPHRRFCGKVGEVVGKRGKAYLVKVRD
GDVYKTIIVRPEHLRPFKQ

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL21_IGNH4 (A8AAK8)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435367.1
- ProteinModelPortal:   A8AAK8
- SMR:   A8AAK8
- STRING:   A8AAK8
- GeneID:   5562515
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0778
- eggNOG:   arNOG13006
- HOGENOM:   HBG497499
- OMA:   RFHGKTG
- BioCyc:   IHOS453591:IGNI_0778-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00369
- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991
- PANTHER:   PTHR20981

Pfam domain/function: PF01157 Ribosomal_L21e; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 11447; Mature: 11447

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKAPKGWRHRTRHIYRKRVREKGAVPPLSLVLIDYKPGDKVIIDPNPAIWSGLPHRRFC
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEECCCCHHHCCCCCHHHH
GKVGEVVGKRGKAYLVKVRDGDVYKTIIVRPEHLRPFKQ
HHHHHHHCCCCCEEEEEECCCCEEEEEEECCHHCCCCCC
>Mature Secondary Structure
MVKAPKGWRHRTRHIYRKRVREKGAVPPLSLVLIDYKPGDKVIIDPNPAIWSGLPHRRFC
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEECCCCHHHCCCCCHHHH
GKVGEVVGKRGKAYLVKVRDGDVYKTIIVRPEHLRPFKQ
HHHHHHHCCCCCEEEEEECCCCEEEEEEECCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA