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The map label for this gene is rps28e [H]

Identifier: 156937516

GI number: 156937516

Start: 651978

End: 652259

Strand: Reverse

Name: rps28e [H]

Synonym: Igni_0723

Alternate gene names: 156937516

Gene position: 652259-651978 (Counterclockwise)

Preceding gene: 156937521

Following gene: 156937514

Centisome position: 50.27

GC content: 54.61

Gene sequence:

>282_bases
ATGGGAGGGCGGGGTCGAGCCGTGCCGAAGAAGGTATATGTAGGCGAGTGGATGAACGAGATTAACGTTACGGAGGAGAT
AGGCTTCCCGGTGGAAGTAATCCAAATCATAGGGAGGACCGGCGTAACAGGAGAGATAACGCAAGTTAGGGTGAGGGTGC
TGGAAGGTAGGGACAAGGGCCGCATCTTGACGAGAAACGTCAAGGGTCCGGTTAGGTTGGGCGACATACTCATCTTGAGG
GAGACCGAAAGGGAAGCGAGGAAGCTCTCAAGCAGAAGGTGA

Upstream 100 bases:

>100_bases
GTTCCAGGCTCTATCTCCCTACCGCAGAAGCTGCAGACCCTTCTTGCCAAGCCCAAGTCCCCGCGTCCCGGCGTTTTAGA
GATTTAAAAGGAAAGCTTAG

Downstream 100 bases:

>100_bases
AGATATCGAAGCGACCATTTTCGCTATCTCGGGGCTGTAAAGCCCCCGCGTTGCGAAGTTGCACCACTTGGGGTCGCCCA
CTCCCCACAGCAAGTAAGCC

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MGGRGRAVPKKVYVGEWMNEINVTEEIGFPVEVIQIIGRTGVTGEITQVRVRVLEGRDKGRILTRNVKGPVRLGDILILR
ETEREARKLSSRR

Sequences:

>Translated_93_residues
MGGRGRAVPKKVYVGEWMNEINVTEEIGFPVEVIQIIGRTGVTGEITQVRVRVLEGRDKGRILTRNVKGPVRLGDILILR
ETEREARKLSSRR
>Mature_92_residues
GGRGRAVPKKVYVGEWMNEINVTEEIGFPVEVIQIIGRTGVTGEITQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRE
TEREARKLSSRR

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323294, Length=58, Percent_Identity=60.3448275862069, Blast_Score=64, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324741, Length=58, Percent_Identity=60.3448275862069, Blast_Score=64, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24651257, Length=57, Percent_Identity=63.1578947368421, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- ProDom:   PD005541 [H]

Pfam domain/function: PF01200 Ribosomal_S28e [H]

EC number: NA

Molecular weight: Translated: 10511; Mature: 10379

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGRGRAVPKKVYVGEWMNEINVTEEIGFPVEVIQIIGRTGVTGEITQVRVRVLEGRDKG
CCCCCCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCCCCHHHHHHHEECCCCCC
RILTRNVKGPVRLGDILILRETEREARKLSSRR
CEEEECCCCCEEECCEEEEECCHHHHHHHCCCC
>Mature Secondary Structure 
GGRGRAVPKKVYVGEWMNEINVTEEIGFPVEVIQIIGRTGVTGEITQVRVRVLEGRDKG
CCCCCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCCCCHHHHHHHEECCCCCC
RILTRNVKGPVRLGDILILRETEREARKLSSRR
CEEEECCCCCEEECCEEEEECCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA