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The map label for this gene is atpD [H]

Identifier: 156937473

GI number: 156937473

Start: 613967

End: 614611

Strand: Direct

Name: atpD [H]

Synonym: Igni_0680

Alternate gene names: 156937473

Gene position: 613967-614611 (Clockwise)

Preceding gene: 156937472

Following gene: 156937474

Centisome position: 47.32

GC content: 48.68

Gene sequence:

>645_bases
TTGAGCTTCCCCGGCAGCAGGAGGGTTTTACCCACAAAGATAAACCTCATCCGCTTGAAGCAGAGAAAGAAGGTAGTAGA
GAGGATCAGAAAGCTCCTAGAGGACAAAAGGGACATTCTCTTAATGTACTTGCGCAAGGCCGTCGCCGATTACCAGAAGT
ACTACGACGCCTACTCCGAACACCTAGAGAGGGCTTACAGCTACTTAATTATGGCTGAGGTTCAGAGCGGCGAGTCAGCA
CTCAAACAAGAAGTGGCCTACGTACCGGAAGACTTGACCGCGAAGATCTACGCGCGCACGGCCTTCGGGGTCAAGATACC
GGTCGTGGAGTTCGCCAGAACGGAAGTTAAGGGCGGGGCCATCTCTAACCTCTACTCTTCGCCCTATTTAGACAAAGCAG
CGAAGGAGTTCGAAGAGGCTATGAAGTACTTAAACAAGGCTATAAACTCCGAGATGAGTATATACAGAATAATGAACGAG
TTACGGAGGACCCAGAGACTCATAAACGCAGTCAAGTATTCCATCTTGCCAGAAATAGAAAACAACATAAAGTTCATCAA
GAGGTCGCTGGACGACCAACAAAGAGAGGAGTTCGTAAGGTTGAAGCTGATAAGGAGTAAGTTGCAGAGCAGGAGGGTGG
CATAA

Upstream 100 bases:

>100_bases
GAGGAGGAGCTGACCAAGATAAGGCCAGAGTACATAAAGAAGTACCACCCCAAGTACAGAGTGAAGGCCGCGTCCCAGAA
GTAACGTGAGGTGCTAAGCT

Downstream 100 bases:

>100_bases
TGAGCGCGGCGTTCCCCTCGAAGGAGGAGTTGTTGAAGGAGCTCCAAGCGACCGTAGAAGGCGCGTTCGCTAACTCGACT
AACAAAGTAAAGAAGAAAGC

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D [H]

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSFPGSRRVLPTKINLIRLKQRKKVVERIRKLLEDKRDILLMYLRKAVADYQKYYDAYSEHLERAYSYLIMAEVQSGESA
LKQEVAYVPEDLTAKIYARTAFGVKIPVVEFARTEVKGGAISNLYSSPYLDKAAKEFEEAMKYLNKAINSEMSIYRIMNE
LRRTQRLINAVKYSILPEIENNIKFIKRSLDDQQREEFVRLKLIRSKLQSRRVA

Sequences:

>Translated_214_residues
MSFPGSRRVLPTKINLIRLKQRKKVVERIRKLLEDKRDILLMYLRKAVADYQKYYDAYSEHLERAYSYLIMAEVQSGESA
LKQEVAYVPEDLTAKIYARTAFGVKIPVVEFARTEVKGGAISNLYSSPYLDKAAKEFEEAMKYLNKAINSEMSIYRIMNE
LRRTQRLINAVKYSILPEIENNIKFIKRSLDDQQREEFVRLKLIRSKLQSRRVA
>Mature_213_residues
SFPGSRRVLPTKINLIRLKQRKKVVERIRKLLEDKRDILLMYLRKAVADYQKYYDAYSEHLERAYSYLIMAEVQSGESAL
KQEVAYVPEDLTAKIYARTAFGVKIPVVEFARTEVKGGAISNLYSSPYLDKAAKEFEEAMKYLNKAINSEMSIYRIMNEL
RRTQRLINAVKYSILPEIENNIKFIKRSLDDQQREEFVRLKLIRSKLQSRRVA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane [H]

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002699 [H]

Pfam domain/function: PF01813 ATP-synt_D [H]

EC number: 3.6.3.14

Molecular weight: Translated: 25154; Mature: 25023

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPGSRRVLPTKINLIRLKQRKKVVERIRKLLEDKRDILLMYLRKAVADYQKYYDAYSE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLERAYSYLIMAEVQSGESALKQEVAYVPEDLTAKIYARTAFGVKIPVVEFARTEVKGGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
ISNLYSSPYLDKAAKEFEEAMKYLNKAINSEMSIYRIMNELRRTQRLINAVKYSILPEIE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNIKFIKRSLDDQQREEFVRLKLIRSKLQSRRVA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFPGSRRVLPTKINLIRLKQRKKVVERIRKLLEDKRDILLMYLRKAVADYQKYYDAYSE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLERAYSYLIMAEVQSGESALKQEVAYVPEDLTAKIYARTAFGVKIPVVEFARTEVKGGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
ISNLYSSPYLDKAAKEFEEAMKYLNKAINSEMSIYRIMNELRRTQRLINAVKYSILPEIE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNIKFIKRSLDDQQREEFVRLKLIRSKLQSRRVA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA