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The map label for this gene is rnp1

Identifier: 156937385

GI number: 156937385

Start: 530824

End: 531102

Strand: Direct

Name: rnp1

Synonym: Igni_0592

Alternate gene names: 156937385

Gene position: 530824-531102 (Clockwise)

Preceding gene: 156937384

Following gene: 156937386

Centisome position: 40.91

GC content: 51.61

Gene sequence:

>279_bases
ATGAAACACACGCCGAAGAACGTTATTTACCACAACTTGGTGGGCCTCCGGGTAGAAGTGTTAGCTCACCCGGACCCCTC
AATGAAGGGCTTGAAGGGTAGGATAATAGACGAGAGCAAGTCCTTCCTAACCATAGAGAAGGACAATGGGGAGTTGGTGA
AAGTGCAGAAGCTCGGTACCTTCGTGTTGGTGCTACCTAGCGGGAGGAAGGTTGAAGTAAGGGGGGAACTGCTAAGGGGG
AGGCCTGAGGAGAGGCTGAAGAAGTTCCTAAAAGCTTAG

Upstream 100 bases:

>100_bases
ACATAGACAACCCGGCTAAAATTAGGAACATCAAAAGGACTATAGCTCGGATACTCACGATAAACAGAGAAGAAGAGCTG
GGCTTGAGAAGGGGCAAACA

Downstream 100 bases:

>100_bases
GCGCGAAGGCCTTGTTAGAGCTGGGCTGAAGGGAAGCTTATGGGGATTTAAAGTGGCGACATTAAAGTTCCCCAGCGAAG
CTTCTACATGCGAAGAATGT

Product: ribonuclease P subunit

Products: NA

Alternate protein names: RNase P component 1

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MKHTPKNVIYHNLVGLRVEVLAHPDPSMKGLKGRIIDESKSFLTIEKDNGELVKVQKLGTFVLVLPSGRKVEVRGELLRG
RPEERLKKFLKA

Sequences:

>Translated_92_residues
MKHTPKNVIYHNLVGLRVEVLAHPDPSMKGLKGRIIDESKSFLTIEKDNGELVKVQKLGTFVLVLPSGRKVEVRGELLRG
RPEERLKKFLKA
>Mature_92_residues
MKHTPKNVIYHNLVGLRVEVLAHPDPSMKGLKGRIIDESKSFLTIEKDNGELVKVQKLGTFVLVLPSGRKVEVRGELLRG
RPEERLKKFLKA

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1588

COG function: function code J; RNase P/RNase MRP subunit p29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP1_IGNH4 (A8AA22)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435181.1
- ProteinModelPortal:   A8AA22
- SMR:   A8AA22
- STRING:   A8AA22
- GeneID:   5562699
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0592
- eggNOG:   arNOG12604
- HOGENOM:   HBG704950
- OMA:   ISTKGRV
- BioCyc:   IHOS453591:IGNI_0592-MONOMER
- HAMAP:   MF_00754
- InterPro:   IPR002730
- Gene3D:   G3DSA:2.30.30.210

Pfam domain/function: PF01868 UPF0086; SSF101744 RNase_P_Rpp29

EC number: =3.1.26.5

Molecular weight: Translated: 10428; Mature: 10428

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHTPKNVIYHNLVGLRVEVLAHPDPSMKGLKGRIIDESKSFLTIEKDNGELVKVQKLGT
CCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEECCE
FVLVLPSGRKVEVRGELLRGRPEERLKKFLKA
EEEEECCCCEEEEECHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKHTPKNVIYHNLVGLRVEVLAHPDPSMKGLKGRIIDESKSFLTIEKDNGELVKVQKLGT
CCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEECCE
FVLVLPSGRKVEVRGELLRGRPEERLKKFLKA
EEEEECCCCEEEEECHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA