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The map label for this gene is rtcB [C]

Identifier: 156937187

GI number: 156937187

Start: 346096

End: 347550

Strand: Direct

Name: rtcB [C]

Synonym: Igni_0393

Alternate gene names: 156937187

Gene position: 346096-347550 (Clockwise)

Preceding gene: 156937186

Following gene: 156937189

Centisome position: 26.67

GC content: 60.82

Gene sequence:

>1455_bases
ATGTCTGCCAACATACCTCTGAAGAGGGTCGGCACCTACGAATGGATGATAGAGAAGGGCGTCAAGCCGTGTATGAAGGT
GCCGGCAATAATATTCGCCGACGAGTACTTGTTAGAGAAGATGAAGAGCGATAGGACCTTGGACCAAGCGGCCAACGTCG
CTTGCCTGCCCGGCATACAGAGGGCCTCCTACGTCATGCCCGACGGCCACCAAGGCTACGGCTTCCCCATAGGCGGGGTG
GCCGCCACAGACCCGGAAGAGGGGGGCGTGATATCCCCCGGAGGGGTAGGGTACGACATAAACTGTGGGGTCAGGCTCAT
AAGGACTAACTTAGACGAAAAGGACGTAAGGCCCAAACTGAAGGACTTGGTCTACACGCTCTTCCGCAACGTGCCCTCCG
GGCTGGGCAGCACCGGGAAGGTCAGGCTGAGCGTCAGCGAGCTGGACAAGGTGCTCGAGGAGGGCGTCTACTGGGCGGTG
GAGAGGGGCTACGGGTGGAGCGATGACCCAGAGCACATAGAGGAGCACGGCAGGATGAAGTACGCCGACGCCAGCAAGGT
AAGCATGAGGGCCAAGCAGAGGGGAGCCCCTCAGCTGGGCACCTTGGGCAGCGGCAACCACTTCCTAGAGGTCCAAGTGG
TGGACAAGATCTACGACGAAAGGGCTGCTAAGGCGATGGGCATAACCCACGAGGGCCAAGTAATGGTAATGGTTCACACC
GGCTCCAGGGGGTTGGGCCACCAAGTGGCGAGCGACTACTTGATAAAGATGGAAAGGGCGATGAAGAAGTACGGAATTGT
GGTCCCCGACAGAGAGCTCGCCTCCGTGCCCTTCAACAGCCCCGAGGCCCAAGACTACTTCAAGGCAATGAGCGCGGCCG
CCAACTACGCTTGGACCAACCGCCAGCTGATAACTCACTGGACCAGGGAGAGCTTCAAGGAAGTGTTCAAGACCGACCCC
GAGAACTTGGACATGCACATAGTCTACGACGTCGCCCACAACATAGCTAAGATAGAGGAGCACGACGTGGACGGTAAGAG
GAAGAAGCTGGTGGTCCACCGGAAGGGCGCCACGAGGGCCTTCCCTCCCGGACACCCGGAGATACCTCAAGACTACCAGA
GCATAGGCCAACCGGTGCTCATACCGGGCTCCATGGGCACGGCGAGCTACGTATTGGTCGGAGTCCCCACGGGCGCGAGG
GTGTGGTACAGCACTTGCCACGGCGCCGGGAGGTGGCTCAGCAGGGCGGCGGCGGTGAGGCAGTACAGGCCGAGGGAGGT
GATAGAGCAGCTCAGCCGTCAAGGCGTGGTGCTGAAGGCCGCCCAAGCTAGGGTGGTGGCCGAGGAGGCCCCCGGGGCCT
ACAAGGACGTGGACAGAGTGGTCAGGGTAGTCCACGAGGTCGGCATAAGCAAGCTCGTGGCGAGGCTGAGGCCCATAGGA
GTGGTCAAGGGCTGA

Upstream 100 bases:

>100_bases
GGTCAGGTCGGGAGAGTTCCCGGGGGAGGGGTACTACTGGTAGTTTCCTAAGCCTCCACTTGATAACTCCCCTTAGGGGG
AGGGCTACCGGTCACGGATT

Downstream 100 bases:

>100_bases
CGGCCTCGGCCAACTTCTTTAAGACCGCCCTCGTCTGGACGGAGCCGAAGTACCCGAAGCTCCCCTTCACGACCGCTATC
ACCGGGTACTCGTCTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSANIPLKRVGTYEWMIEKGVKPCMKVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIQRASYVMPDGHQGYGFPIGGV
AATDPEEGGVISPGGVGYDINCGVRLIRTNLDEKDVRPKLKDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAV
ERGYGWSDDPEHIEEHGRMKYADASKVSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHT
GSRGLGHQVASDYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTNRQLITHWTRESFKEVFKTDP
ENLDMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRAFPPGHPEIPQDYQSIGQPVLIPGSMGTASYVLVGVPTGAR
VWYSTCHGAGRWLSRAAAVRQYRPREVIEQLSRQGVVLKAAQARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIG
VVKG

Sequences:

>Translated_484_residues
MSANIPLKRVGTYEWMIEKGVKPCMKVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIQRASYVMPDGHQGYGFPIGGV
AATDPEEGGVISPGGVGYDINCGVRLIRTNLDEKDVRPKLKDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAV
ERGYGWSDDPEHIEEHGRMKYADASKVSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHT
GSRGLGHQVASDYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTNRQLITHWTRESFKEVFKTDP
ENLDMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRAFPPGHPEIPQDYQSIGQPVLIPGSMGTASYVLVGVPTGAR
VWYSTCHGAGRWLSRAAAVRQYRPREVIEQLSRQGVVLKAAQARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIG
VVKG
>Mature_483_residues
SANIPLKRVGTYEWMIEKGVKPCMKVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIQRASYVMPDGHQGYGFPIGGVA
ATDPEEGGVISPGGVGYDINCGVRLIRTNLDEKDVRPKLKDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAVE
RGYGWSDDPEHIEEHGRMKYADASKVSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHTG
SRGLGHQVASDYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTNRQLITHWTRESFKEVFKTDPE
NLDMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRAFPPGHPEIPQDYQSIGQPVLIPGSMGTASYVLVGVPTGARV
WYSTCHGAGRWLSRAAAVRQYRPREVIEQLSRQGVVLKAAQARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIGV
VKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=496, Percent_Identity=51.8145161290323, Blast_Score=527, Evalue=1e-150,
Organism=Escherichia coli, GI2367224, Length=442, Percent_Identity=28.5067873303167, Blast_Score=141, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17506665, Length=496, Percent_Identity=51.2096774193548, Blast_Score=501, Evalue=1e-142,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=52.4291497975709, Blast_Score=507, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53469; Mature: 53338

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANIPLKRVGTYEWMIEKGVKPCMKVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIQ
CCCCCCHHHCCHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHHCCCCHHHHCCEEECCCCC
RASYVMPDGHQGYGFPIGGVAATDPEEGGVISPGGVGYDINCGVRLIRTNLDEKDVRPKL
CCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCEEEEECCCCHHHCCHHH
KDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAVERGYGWSDDPEHIEEHGRMK
HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCEE
YADASKVSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHT
ECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEC
GSRGLGHQVASDYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
RQLITHWTRESFKEVFKTDPENLDMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRA
CHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHEEEEEECCCCCC
FPPGHPEIPQDYQSIGQPVLIPGSMGTASYVLVGVPTGARVWYSTCHGAGRWLSRAAAVR
CCCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QYRPREVIEQLSRQGVVLKAAQARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIG
HCCHHHHHHHHHHCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVKG
CCCC
>Mature Secondary Structure 
SANIPLKRVGTYEWMIEKGVKPCMKVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIQ
CCCCCHHHCCHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHHCCCCHHHHCCEEECCCCC
RASYVMPDGHQGYGFPIGGVAATDPEEGGVISPGGVGYDINCGVRLIRTNLDEKDVRPKL
CCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCEEEEECCCCHHHCCHHH
KDLVYTLFRNVPSGLGSTGKVRLSVSELDKVLEEGVYWAVERGYGWSDDPEHIEEHGRMK
HHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCEE
YADASKVSMRAKQRGAPQLGTLGSGNHFLEVQVVDKIYDERAAKAMGITHEGQVMVMVHT
ECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEC
GSRGLGHQVASDYLIKMERAMKKYGIVVPDRELASVPFNSPEAQDYFKAMSAAANYAWTN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
RQLITHWTRESFKEVFKTDPENLDMHIVYDVAHNIAKIEEHDVDGKRKKLVVHRKGATRA
CHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHEEEEEECCCCCC
FPPGHPEIPQDYQSIGQPVLIPGSMGTASYVLVGVPTGARVWYSTCHGAGRWLSRAAAVR
CCCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QYRPREVIEQLSRQGVVLKAAQARVVAEEAPGAYKDVDRVVRVVHEVGISKLVARLRPIG
HCCHHHHHHHHHHCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVKG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]