Click here to switch to the map view.

The map label for this gene is albA

Identifier: 156936969

GI number: 156936969

Start: 156959

End: 157252

Strand: Direct

Name: albA

Synonym: Igni_0174

Alternate gene names: 156936969

Gene position: 156959-157252 (Clockwise)

Preceding gene: 156936968

Following gene: 156936970

Centisome position: 12.1

GC content: 57.82

Gene sequence:

>294_bases
GTGGCCGCTCAGATACCCCAAAGCAACGAGGTTAGGGTCGGTAAGAAGCCCGTCATGAACTACGTGCTGGCGACCCTGAC
CCTCCTGAACCAGGGTGTGGACAGGATAGAGATAAAGGCCAGGGGTAGGGCCATAAGCAAGGCGGTAGACACCGTGGAGA
TAGTGAGGAACAGGTTCCTGCCCGGCCAAGTGAGGGTCGCTGAGATAAGGATCGGCAGCCAGACCGTGACCAGCGCCGAC
GGCAGGCAGAGCAGGATAAGCACCATAGACATAGTCTTGGAGAGGGTCAAGTAA

Upstream 100 bases:

>100_bases
CGCGGTCGTGGTGAACCCCGAGGAGCAGGGCGCGGAGGAAGTACTCGACTTTCTCAATCATTTATAATCCCCCTCGGACC
GGCTAGCCCGGTGAAAGGTC

Downstream 100 bases:

>100_bases
GTCCGAACGAACCAAGCTATTTTTAGGCGCAAACTCTAAGCCTTACTACGGGGCTAGCTTGGAGGAAACGAAAAAGGTAA
CCGTGTTCGAGGGCGAGGCT

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MAAQIPQSNEVRVGKKPVMNYVLATLTLLNQGVDRIEIKARGRAISKAVDTVEIVRNRFLPGQVRVAEIRIGSQTVTSAD
GRQSRISTIDIVLERVK

Sequences:

>Translated_97_residues
MAAQIPQSNEVRVGKKPVMNYVLATLTLLNQGVDRIEIKARGRAISKAVDTVEIVRNRFLPGQVRVAEIRIGSQTVTSAD
GRQSRISTIDIVLERVK
>Mature_96_residues
AAQIPQSNEVRVGKKPVMNYVLATLTLLNQGVDRIEIKARGRAISKAVDTVEIVRNRFLPGQVRVAEIRIGSQTVTSADG
RQSRISTIDIVLERVK

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALBA_IGNH4 (A8A8V6)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001434765.1
- ProteinModelPortal:   A8A8V6
- SMR:   A8A8V6
- STRING:   A8A8V6
- GeneID:   5562396
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0174
- eggNOG:   arNOG12628
- HOGENOM:   HBG727709
- OMA:   STIEIVL
- ProtClustDB:   PRK04015
- BioCyc:   IHOS453591:IGNI_0174-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_01122
- InterPro:   IPR013795
- InterPro:   IPR002775
- PIRSF:   PIRSF028732
- TIGRFAMs:   TIGR00285

Pfam domain/function: PF01918 Alba

EC number: NA

Molecular weight: Translated: 10712; Mature: 10580

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQIPQSNEVRVGKKPVMNYVLATLTLLNQGVDRIEIKARGRAISKAVDTVEIVRNRFL
CCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
PGQVRVAEIRIGSQTVTSADGRQSRISTIDIVLERVK
CCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAQIPQSNEVRVGKKPVMNYVLATLTLLNQGVDRIEIKARGRAISKAVDTVEIVRNRFL
CCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
PGQVRVAEIRIGSQTVTSADGRQSRISTIDIVLERVK
CCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA