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The map label for this gene is 156936952

Identifier: 156936952

GI number: 156936952

Start: 142310

End: 142585

Strand: Direct

Name: 156936952

Synonym: Igni_0157

Alternate gene names: NA

Gene position: 142310-142585 (Clockwise)

Preceding gene: 156936948

Following gene: 156936953

Centisome position: 10.97

GC content: 52.54

Gene sequence:

>276_bases
ATGGCGCGCGGCCAAGAGAAAGGTAAGCTGAACCTCGAGAACCCGTTGAAGTACTTGAGGGCGGCAGTGGACAACGTGGT
ACTAGTGAGGCTGAAGGACGGCAACGAATACGTGGGCAAGCTCGTCTTCACTGATAACACAATGAACTTGATACTCGACG
ACTGCACCGAGCTTTCCCCAGAGACCGGAGAGCCCGTAGCCAAGTACGGCCGGATCATGATCAGAGGGAGTTACGTACTC
TTCATAAGTCTGGACTATCACAAGGTCATGAAATAG

Upstream 100 bases:

>100_bases
TCGACCCGAGGCACTACCTTCCTGTGAGGCGTATATAAGTCTCGAGCGCATGGAACCGCTTTAAGCTAACGAGCTCTGAT
GGGAAGGCGGGAAAGAAGCG

Downstream 100 bases:

>100_bases
GTGACCGGAAATGAAGAACGTAACCGTAACCAAGCTCCCCCTTCCACCACAGGACGAGTTAGACGTGGAGATAGTTGAGA
GGAAGGGGACCGGACACCCG

Product: like-Sm ribonucleoprotein, core

Products: NA

Alternate protein names: Small Nucleolar RNP Protein Sm; SnRNP Sm-Like Protein; Small Nuclear Ribonucleoprotein; Sm-Like Protein; LSM Family Small Nuclear Ribonucleoprotein; Small Nuclear Ribonucleoprotein LSM Family

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIMIRGSYVL
FISLDYHKVMK

Sequences:

>Translated_91_residues
MARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIMIRGSYVL
FISLDYHKVMK
>Mature_90_residues
ARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIMIRGSYVLF
ISLDYHKVMK

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10321; Mature: 10190

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSP
CCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCEEEEECHHCCCC
ETGEPVAKYGRIMIRGSYVLFISLDYHKVMK
CCCCCHHHCCEEEEECCEEEEEEECHHHHCC
>Mature Secondary Structure 
ARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSP
CCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCEEEEECHHCCCC
ETGEPVAKYGRIMIRGSYVLFISLDYHKVMK
CCCCCHHHCCEEEEECCEEEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA