| Definition | Ignicoccus hospitalis KIN4/I chromosome, complete genome. |
|---|---|
| Accession | NC_009776 |
| Length | 1,297,538 |
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The map label for this gene is thsA [H]
Identifier: 156936891
GI number: 156936891
Start: 89714
End: 91390
Strand: Direct
Name: thsA [H]
Synonym: Igni_0096
Alternate gene names: 156936891
Gene position: 89714-91390 (Clockwise)
Preceding gene: 156936886
Following gene: 156936892
Centisome position: 6.91
GC content: 58.14
Gene sequence:
>1677_bases ATGGCGGCCGGTGTACCGGTTCTGATACTCAAGGAGGGCGCCACCAGGACCTACGGCAGGGAGGCTCTGAGGAGCAACAT ACTAGCCGCTAGGATAATTGCCGAAGCGTTGAAGACCAGCTTGGGTCCCAGAGGAATGGACAAGATGATAGTTGACGCCT TCGGAGACATCACTGTAACCAACGACGGTGTAACCATACTCAAGGAGATGGACGTCCAGCACCCTGCCGCCAAGTTGATC GTGGAGACCGCCAAGGCTCAAGATGCGGAGGTGGGCGACGGCACTACCAGCGTCGTCGTCTTGGCCGGCAGCTTGCTGGA AAAGGCCGAGCCCCTGCTCGACCAGAACATCCACCCCAGCATAATAATCGAAGGATACAAGAAGGCGATGGAGAAGGCTC TAGAGGAGCTCAGCAACATAGCCGTTAAGATAAACCCCAAGGACAAGGAGTATATGAGGAAGCTAGTATACACCACCCTC AGCAGCAAGTTCGTCGGCCAGGAGGCCGAGGAGATAAGGAACAAGCTGCTAGACATGATAATCGAGGCCGCCTACACCGT GGCCGTCGAGCAGCCTGACGGCACTCTGAGGATGAGCCTCGACGACATAAAGATAGAAAAGAAGAAGGGCGGAAGCTTGC TCGACAGCCAGCTGGTAAAGGGCATAGTGCTGGACAAGGAAGTGGTCCACCCGGGCATGCCGAAGAGGGTGGAGAACGCG AAGATACTGGTCCTCGACGCCCCGCTGGAGGTCGAGAAGCCCGACATAACTGCCAAGATAAACATAACTGACCCCAGGCA GATAGAGGCGTTCTTGGAGGAGCAGACCAAGATACTCAAGGAGATGGTAGACAAGATCGCCGAGACCGGCGCCAACGTAG TGATAACTCAGAAGGGCATCGACGACGTCGCCGCTCACTTCTTGGCGAAGAAGGGCATAATGGCCGTTAGGAGGGTGAAG AGGAGCGACATAGAGAAGGTGGCCAAGGCTACCGGAGCCAAGGTGGTGACCAGCATAAAGGACGTGAGCCCCGAGGTGTT GGGCGAGGCCAAGCTAGTGGAGGAGAGGAGGGTAGGCAAGGACAAGATGGTCTTCATCGAGGGCGCCAAGAACCCGAGGG CGGTCACCATACTGCTGAGGGGTGCCAGCGACATGGCGCTGGACGAGGCTGAGAGGAACATAACCGACGCTCTCCACGTG CTGAGGAACATATTCATGAAGCCCATGATAGTGGGCGGCGGAGGGGCGGTGGAGGTAGAGCTCGCCGAGCGCTTGAGGAA GTTCGCTTCCACCGTGGGCGGCAAGGAGCAGCTGGCGATAGAGGCTTACGCCGAGGCACTCGAAGAGATACCGGTAGTGT TGGCCGACACCGCGGGTATGGACACCCTCGAAGCGCTCATGGAACTGAGGAAGCTCCACAGGGAAGGCAAGATCTGGGCT GGCGTCAACGTAGTCGAGGGCAAGATAGAGGAGGACATGACCAAGCTCGGAGTAGTGGAGCCGGTGAGGGTGAGGGAGCA AGTGCTCAAGAGCGCCACCGAGGCAGCTAACGCCTTGCTGAAGATCGACGACGTGATTGCGGCCGCCCCGCCGAAGGAGG GCAAGAAGGGCAAGAAGGAAGAGGGCGGAGAGGAGGAAGAGGAAGGCGGCTCCAGCAAGTTCGGAAGCGAGTTCTAA
Upstream 100 bases:
>100_bases AAGTTTGGCGATTTGTAATGCTGAGAGGCTAAGGGGCCAGCATGGTGGCGAAAAACTTATATAGAACCGGTTCCACCACA CCCCACGGTGGGTGAGCGCG
Downstream 100 bases:
>100_bases GGCCTTTTTTAGTTTCTCGCTCTCCCGCGCCCCGGAGCTCGAACTTGATGAAGTGGAGAGAAGAGTGCGTCCGGTGCCTG CTCGACGCCCGCATTTACGA
Product: thermosome
Products: NA
Alternate protein names: Chaperonin subunit alpha; Thermosome subunit 1 [H]
Number of amino acids: Translated: 558; Mature: 557
Protein sequence:
>558_residues MAAGVPVLILKEGATRTYGREALRSNILAARIIAEALKTSLGPRGMDKMIVDAFGDITVTNDGVTILKEMDVQHPAAKLI VETAKAQDAEVGDGTTSVVVLAGSLLEKAEPLLDQNIHPSIIIEGYKKAMEKALEELSNIAVKINPKDKEYMRKLVYTTL SSKFVGQEAEEIRNKLLDMIIEAAYTVAVEQPDGTLRMSLDDIKIEKKKGGSLLDSQLVKGIVLDKEVVHPGMPKRVENA KILVLDAPLEVEKPDITAKINITDPRQIEAFLEEQTKILKEMVDKIAETGANVVITQKGIDDVAAHFLAKKGIMAVRRVK RSDIEKVAKATGAKVVTSIKDVSPEVLGEAKLVEERRVGKDKMVFIEGAKNPRAVTILLRGASDMALDEAERNITDALHV LRNIFMKPMIVGGGGAVEVELAERLRKFASTVGGKEQLAIEAYAEALEEIPVVLADTAGMDTLEALMELRKLHREGKIWA GVNVVEGKIEEDMTKLGVVEPVRVREQVLKSATEAANALLKIDDVIAAAPPKEGKKGKKEEGGEEEEEGGSSKFGSEF
Sequences:
>Translated_558_residues MAAGVPVLILKEGATRTYGREALRSNILAARIIAEALKTSLGPRGMDKMIVDAFGDITVTNDGVTILKEMDVQHPAAKLI VETAKAQDAEVGDGTTSVVVLAGSLLEKAEPLLDQNIHPSIIIEGYKKAMEKALEELSNIAVKINPKDKEYMRKLVYTTL SSKFVGQEAEEIRNKLLDMIIEAAYTVAVEQPDGTLRMSLDDIKIEKKKGGSLLDSQLVKGIVLDKEVVHPGMPKRVENA KILVLDAPLEVEKPDITAKINITDPRQIEAFLEEQTKILKEMVDKIAETGANVVITQKGIDDVAAHFLAKKGIMAVRRVK RSDIEKVAKATGAKVVTSIKDVSPEVLGEAKLVEERRVGKDKMVFIEGAKNPRAVTILLRGASDMALDEAERNITDALHV LRNIFMKPMIVGGGGAVEVELAERLRKFASTVGGKEQLAIEAYAEALEEIPVVLADTAGMDTLEALMELRKLHREGKIWA GVNVVEGKIEEDMTKLGVVEPVRVREQVLKSATEAANALLKIDDVIAAAPPKEGKKGKKEEGGEEEEEGGSSKFGSEF >Mature_557_residues AAGVPVLILKEGATRTYGREALRSNILAARIIAEALKTSLGPRGMDKMIVDAFGDITVTNDGVTILKEMDVQHPAAKLIV ETAKAQDAEVGDGTTSVVVLAGSLLEKAEPLLDQNIHPSIIIEGYKKAMEKALEELSNIAVKINPKDKEYMRKLVYTTLS SKFVGQEAEEIRNKLLDMIIEAAYTVAVEQPDGTLRMSLDDIKIEKKKGGSLLDSQLVKGIVLDKEVVHPGMPKRVENAK ILVLDAPLEVEKPDITAKINITDPRQIEAFLEEQTKILKEMVDKIAETGANVVITQKGIDDVAAHFLAKKGIMAVRRVKR SDIEKVAKATGAKVVTSIKDVSPEVLGEAKLVEERRVGKDKMVFIEGAKNPRAVTILLRGASDMALDEAERNITDALHVL RNIFMKPMIVGGGGAVEVELAERLRKFASTVGGKEQLAIEAYAEALEEIPVVLADTAGMDTLEALMELRKLHREGKIWAG VNVVEGKIEEDMTKLGVVEPVRVREQVLKSATEAANALLKIDDVIAAAPPKEGKKGKKEEGGEEEEEGGSSKFGSEF
Specific function: Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TCP-1 chaperonin family [H]
Homologues:
Organism=Homo sapiens, GI24307939, Length=530, Percent_Identity=42.4528301886792, Blast_Score=382, Evalue=1e-106, Organism=Homo sapiens, GI38455427, Length=509, Percent_Identity=42.4361493123772, Blast_Score=379, Evalue=1e-105, Organism=Homo sapiens, GI57863257, Length=552, Percent_Identity=38.5869565217391, Blast_Score=374, Evalue=1e-103, Organism=Homo sapiens, GI63162572, Length=561, Percent_Identity=36.541889483066, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI5453607, Length=528, Percent_Identity=38.4469696969697, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI261399877, Length=488, Percent_Identity=37.0901639344262, Blast_Score=322, Evalue=5e-88, Organism=Homo sapiens, GI58761484, Length=561, Percent_Identity=33.3333333333333, Blast_Score=315, Evalue=8e-86, Organism=Homo sapiens, GI5453603, Length=539, Percent_Identity=37.1057513914657, Blast_Score=310, Evalue=3e-84, Organism=Homo sapiens, GI4502643, Length=518, Percent_Identity=37.0656370656371, Blast_Score=306, Evalue=3e-83, Organism=Homo sapiens, GI58331173, Length=514, Percent_Identity=35.9922178988327, Blast_Score=295, Evalue=1e-79, Organism=Homo sapiens, GI261399875, Length=443, Percent_Identity=34.3115124153499, Blast_Score=265, Evalue=8e-71, Organism=Homo sapiens, GI48762932, Length=541, Percent_Identity=34.5656192236599, Blast_Score=248, Evalue=8e-66, Organism=Homo sapiens, GI302058290, Length=507, Percent_Identity=33.3333333333333, Blast_Score=248, Evalue=1e-65, Organism=Homo sapiens, GI57863259, Length=398, Percent_Identity=35.929648241206, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI58331171, Length=518, Percent_Identity=33.011583011583, Blast_Score=244, Evalue=2e-64, Organism=Homo sapiens, GI302058292, Length=514, Percent_Identity=31.9066147859922, Blast_Score=233, Evalue=5e-61, Organism=Homo sapiens, GI58331185, Length=317, Percent_Identity=34.0694006309148, Blast_Score=205, Evalue=8e-53, Organism=Homo sapiens, GI7657253, Length=509, Percent_Identity=24.950884086444, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI25914754, Length=444, Percent_Identity=21.8468468468468, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI9055272, Length=444, Percent_Identity=21.8468468468468, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI121583483, Length=191, Percent_Identity=27.2251308900524, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI1790586, Length=583, Percent_Identity=23.6706689536878, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25144674, Length=528, Percent_Identity=42.0454545454545, Blast_Score=376, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17532601, Length=533, Percent_Identity=39.9624765478424, Blast_Score=367, Evalue=1e-102, Organism=Caenorhabditis elegans, GI17564182, Length=526, Percent_Identity=36.1216730038023, Blast_Score=354, Evalue=7e-98, Organism=Caenorhabditis elegans, GI25148561, Length=547, Percent_Identity=36.745886654479, Blast_Score=349, Evalue=3e-96, Organism=Caenorhabditis elegans, GI17532603, Length=516, Percent_Identity=40.1162790697674, Blast_Score=348, Evalue=5e-96, Organism=Caenorhabditis elegans, GI25147750, Length=537, Percent_Identity=37.243947858473, Blast_Score=316, Evalue=2e-86, Organism=Caenorhabditis elegans, GI32566944, Length=448, Percent_Identity=36.3839285714286, Blast_Score=308, Evalue=7e-84, Organism=Caenorhabditis elegans, GI25144678, Length=526, Percent_Identity=34.7908745247148, Blast_Score=269, Evalue=3e-72, Organism=Caenorhabditis elegans, GI71998178, Length=578, Percent_Identity=28.8927335640138, Blast_Score=229, Evalue=2e-60, Organism=Caenorhabditis elegans, GI25144680, Length=398, Percent_Identity=36.1809045226131, Blast_Score=229, Evalue=3e-60, Organism=Caenorhabditis elegans, GI71981457, Length=326, Percent_Identity=40.1840490797546, Blast_Score=215, Evalue=4e-56, Organism=Caenorhabditis elegans, GI17555558, Length=571, Percent_Identity=22.5919439579685, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212650582, Length=310, Percent_Identity=22.5806451612903, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193210679, Length=131, Percent_Identity=30.5343511450382, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322446, Length=539, Percent_Identity=37.1057513914657, Blast_Score=364, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6320418, Length=544, Percent_Identity=37.6838235294118, Blast_Score=343, Evalue=3e-95, Organism=Saccharomyces cerevisiae, GI6322350, Length=550, Percent_Identity=34.9090909090909, Blast_Score=343, Evalue=5e-95, Organism=Saccharomyces cerevisiae, GI6322524, Length=539, Percent_Identity=36.9202226345083, Blast_Score=330, Evalue=3e-91, Organism=Saccharomyces cerevisiae, GI6320058, Length=515, Percent_Identity=36.1165048543689, Blast_Score=320, Evalue=3e-88, Organism=Saccharomyces cerevisiae, GI6322049, Length=533, Percent_Identity=37.3358348968105, Blast_Score=293, Evalue=7e-80, Organism=Saccharomyces cerevisiae, GI6320393, Length=528, Percent_Identity=32.3863636363636, Blast_Score=249, Evalue=9e-67, Organism=Saccharomyces cerevisiae, GI6322452, Length=524, Percent_Identity=30.1526717557252, Blast_Score=229, Evalue=1e-60, Organism=Saccharomyces cerevisiae, GI6321131, Length=187, Percent_Identity=25.668449197861, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI24649027, Length=544, Percent_Identity=38.9705882352941, Blast_Score=371, Evalue=1e-103, Organism=Drosophila melanogaster, GI24649029, Length=544, Percent_Identity=38.9705882352941, Blast_Score=371, Evalue=1e-103, Organism=Drosophila melanogaster, GI17647245, Length=530, Percent_Identity=41.1320754716981, Blast_Score=364, Evalue=1e-101, Organism=Drosophila melanogaster, GI24645179, Length=535, Percent_Identity=38.1308411214953, Blast_Score=357, Evalue=1e-98, Organism=Drosophila melanogaster, GI24647512, Length=559, Percent_Identity=37.0304114490161, Blast_Score=354, Evalue=1e-97, Organism=Drosophila melanogaster, GI24647510, Length=559, Percent_Identity=37.0304114490161, Blast_Score=354, Evalue=1e-97, Organism=Drosophila melanogaster, GI24652903, Length=507, Percent_Identity=41.4201183431953, Blast_Score=353, Evalue=2e-97, Organism=Drosophila melanogaster, GI24583944, Length=509, Percent_Identity=38.8998035363458, Blast_Score=338, Evalue=6e-93, Organism=Drosophila melanogaster, GI18858175, Length=536, Percent_Identity=36.9402985074627, Blast_Score=316, Evalue=3e-86, Organism=Drosophila melanogaster, GI28571140, Length=536, Percent_Identity=36.9402985074627, Blast_Score=316, Evalue=3e-86, Organism=Drosophila melanogaster, GI18859933, Length=519, Percent_Identity=35.0674373795761, Blast_Score=276, Evalue=4e-74, Organism=Drosophila melanogaster, GI19921848, Length=559, Percent_Identity=34.7048300536673, Blast_Score=260, Evalue=2e-69, Organism=Drosophila melanogaster, GI20130093, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45552711, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017998 - InterPro: IPR002194 - InterPro: IPR002423 - InterPro: IPR012714 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 60566; Mature: 60435
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00750 TCP1_1 ; PS00751 TCP1_2 ; PS00995 TCP1_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGVPVLILKEGATRTYGREALRSNILAARIIAEALKTSLGPRGMDKMIVDAFGDITVT CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE NDGVTILKEMDVQHPAAKLIVETAKAQDAEVGDGTTSVVVLAGSLLEKAEPLLDQNIHPS CCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC IIIEGYKKAMEKALEELSNIAVKINPKDKEYMRKLVYTTLSSKFVGQEAEEIRNKLLDMI EEEHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IEAAYTVAVEQPDGTLRMSLDDIKIEKKKGGSLLDSQLVKGIVLDKEVVHPGMPKRVENA HHHHHEEEEECCCCCEEEEHHHEEEECCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC KILVLDAPLEVEKPDITAKINITDPRQIEAFLEEQTKILKEMVDKIAETGANVVITQKGI EEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH DDVAAHFLAKKGIMAVRRVKRSDIEKVAKATGAKVVTSIKDVSPEVLGEAKLVEERRVGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC DKMVFIEGAKNPRAVTILLRGASDMALDEAERNITDALHVLRNIFMKPMIVGGGGAVEVE CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEHH LAERLRKFASTVGGKEQLAIEAYAEALEEIPVVLADTAGMDTLEALMELRKLHREGKIWA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCEEE GVNVVEGKIEEDMTKLGVVEPVRVREQVLKSATEAANALLKIDDVIAAAPPKEGKKGKKE CCHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC EGGEEEEEGGSSKFGSEF CCCCCHHCCCCCCCCCCC >Mature Secondary Structure AAGVPVLILKEGATRTYGREALRSNILAARIIAEALKTSLGPRGMDKMIVDAFGDITVT CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE NDGVTILKEMDVQHPAAKLIVETAKAQDAEVGDGTTSVVVLAGSLLEKAEPLLDQNIHPS CCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC IIIEGYKKAMEKALEELSNIAVKINPKDKEYMRKLVYTTLSSKFVGQEAEEIRNKLLDMI EEEHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH IEAAYTVAVEQPDGTLRMSLDDIKIEKKKGGSLLDSQLVKGIVLDKEVVHPGMPKRVENA HHHHHEEEEECCCCCEEEEHHHEEEECCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC KILVLDAPLEVEKPDITAKINITDPRQIEAFLEEQTKILKEMVDKIAETGANVVITQKGI EEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH DDVAAHFLAKKGIMAVRRVKRSDIEKVAKATGAKVVTSIKDVSPEVLGEAKLVEERRVGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC DKMVFIEGAKNPRAVTILLRGASDMALDEAERNITDALHVLRNIFMKPMIVGGGGAVEVE CCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEHH LAERLRKFASTVGGKEQLAIEAYAEALEEIPVVLADTAGMDTLEALMELRKLHREGKIWA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCEEE GVNVVEGKIEEDMTKLGVVEPVRVREQVLKSATEAANALLKIDDVIAAAPPKEGKKGKKE CCHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC EGGEEEEEGGSSKFGSEF CCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966 [H]