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The map label for this gene is ytlP [H]

Identifier: 154687134

GI number: 154687134

Start: 2830831

End: 2831382

Strand: Reverse

Name: ytlP [H]

Synonym: RBAM_027060

Alternate gene names: 154687134

Gene position: 2831382-2830831 (Counterclockwise)

Preceding gene: 154687136

Following gene: 154687133

Centisome position: 72.26

GC content: 50.54

Gene sequence:

>552_bases
ATGAAAGCTTCATTGCCGCATTATTTTATCGGCATTCCGATTCCGGCTGACATTGCTGAACCGATTTGGGAAGCAGCCAA
AAAGGAGCCGGCGTTATCATTCAAAAAATGGGTGCACCCGCATGACTATCATATTACACTCATTTTTCTCGGAGCCGCGG
ATGAAGAACGGCTTGCGAAATTATCGTCTCTGCTCGCAGATGCTGCGTCGGCAGCGCAGCCGTTTACCGTACAGTTTCAG
CATCTGGATATTTTCGGCGACCGCAGACAGCCGAGAGTGCTTCACCTTGAGCCCGAACGGAATGAACTGCTCTTTGATTT
GCGGGAAAAAACAAAACAGGCTGTTTTGAAGGCCGGTTTTCAAGTGGAAAAACGCCCGTATCACCCTCATATGACGATGG
CGCGGAAGTGGGCGGGAGACCGGCCGTTTCCTGACGATGTGCCGTTTGAAAGCGGCAGGGTGCAAAGTGCCGTCAGCCGG
TTTTCCTTGTTTCAGACCCATCTTGACCGGTCGCCAAAATACGAAGAAATCGCACAGTTTCAATTGACATAA

Upstream 100 bases:

>100_bases
GTTCGGTACATAATATCCTATCATAATGAGCGGACAGGGTTCTCCTCTCCGCTTATCCGTTTTATAATAACACCATAACC
AAAGAGGGGGAGATCCTCGT

Downstream 100 bases:

>100_bases
ACAAATATTCGGAGTGGAGAAATCACATGGCACAGATCATCAAAATTCACGACTGCATATCCAGATATGAACTTGATCCA
TATCATTATATGAACCAGTT

Product: YtlP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKASLPHYFIGIPIPADIAEPIWEAAKKEPALSFKKWVHPHDYHITLIFLGAADEERLAKLSSLLADAASAAQPFTVQFQ
HLDIFGDRRQPRVLHLEPERNELLFDLREKTKQAVLKAGFQVEKRPYHPHMTMARKWAGDRPFPDDVPFESGRVQSAVSR
FSLFQTHLDRSPKYEEIAQFQLT

Sequences:

>Translated_183_residues
MKASLPHYFIGIPIPADIAEPIWEAAKKEPALSFKKWVHPHDYHITLIFLGAADEERLAKLSSLLADAASAAQPFTVQFQ
HLDIFGDRRQPRVLHLEPERNELLFDLREKTKQAVLKAGFQVEKRPYHPHMTMARKWAGDRPFPDDVPFESGRVQSAVSR
FSLFQTHLDRSPKYEEIAQFQLT
>Mature_183_residues
MKASLPHYFIGIPIPADIAEPIWEAAKKEPALSFKKWVHPHDYHITLIFLGAADEERLAKLSSLLADAASAAQPFTVQFQ
HLDIFGDRRQPRVLHLEPERNELLFDLREKTKQAVLKAGFQVEKRPYHPHMTMARKWAGDRPFPDDVPFESGRVQSAVSR
FSLFQTHLDRSPKYEEIAQFQLT

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: 6.5.1.- [C]

Molecular weight: Translated: 21069; Mature: 21069

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASLPHYFIGIPIPADIAEPIWEAAKKEPALSFKKWVHPHDYHITLIFLGAADEERLAK
CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEECCCHHHHHH
LSSLLADAASAAQPFTVQFQHLDIFGDRRQPRVLHLEPERNELLFDLREKTKQAVLKAGF
HHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
QVEKRPYHPHMTMARKWAGDRPFPDDVPFESGRVQSAVSRFSLFQTHLDRSPKYEEIAQF
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
QLT
CCC
>Mature Secondary Structure
MKASLPHYFIGIPIPADIAEPIWEAAKKEPALSFKKWVHPHDYHITLIFLGAADEERLAK
CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEECCCHHHHHH
LSSLLADAASAAQPFTVQFQHLDIFGDRRQPRVLHLEPERNELLFDLREKTKQAVLKAGF
HHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
QVEKRPYHPHMTMARKWAGDRPFPDDVPFESGRVQSAVSRFSLFQTHLDRSPKYEEIAQF
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
QLT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]