Click here to switch to the map view.

The map label for this gene is abfA [H]

Identifier: 154687006

GI number: 154687006

Start: 2701886

End: 2703385

Strand: Reverse

Name: abfA [H]

Synonym: RBAM_025780

Alternate gene names: 154687006

Gene position: 2703385-2701886 (Counterclockwise)

Preceding gene: 154687007

Following gene: 154687005

Centisome position: 68.99

GC content: 48.73

Gene sequence:

>1500_bases
ATGAAAAAAGCGGGGATTACAGCAGATAAAGAATATATCATCGGTGAAGTGGACAAACGGATGTACGGATCATTTATAGA
ACATATGGGCCGGGCGGTGTATGAAGGCATTTATGAGCCCGGACACCCGAAAGCCGACAAGGACGGCTTCAGAACAGACG
TGCAGGAGTTAATCAAGGAATTGCAAGTGCCGTTCATCCGCTATCCGGGAGGGAATTTTCTCTCGGGCTACAATTGGGAA
GACGGCGTCGGGCCGGTGAAGGACCGCCCGCGGAGGCTTGATTTGGCATGGCAGACGACAGAAACGAACGAAGTAGGGAC
GAATGAATTTTTAACGTGGGCGAAAAAAGTGAACGCCGAAGTGAATATGGCGGTCAATCTCGGGACGAGAGGGATCGATG
CCGCCCGGAACCTCGTCGAATACTGCAACCATCCTGAAGGGTCGTACTGGAGCGACTTACGAAAATCGCACGGATATGAA
AAACCTTACGGCATCAAAACATGGTGCTTAGGAAATGAGATGGACGGCCCTTGGCAGATCGGTCATAAAACGGCGCATGA
ATACGGACGGCTCGCAGCTGAAACGGCAAAGGTGATGAAATGGACGGACCCGACGATCGAATTGGTGGCTTGCGGAAGCT
CAAACAGCGGCATGCCGTCCTTCATTGAGTGGGAGGCCGAGGTGCTTGAGCATACGTACGAGCATGTGGATTACATCTCA
CTGCATACGTATTACGGCAACCATGAAAATGATCTTGAGAACTATTTGGCGAAGTCGATGGATTTAGACCATTTTATTAA
ATCCGTCACAGCCGTATGTGATTATATGAAAGCGAAAAAACGCAGCAAAAAAACGATTCACCTTTCTTTAGATGAATGGA
ATGTGTGGTATCACTCAAATGAAGCGGATAAAAAAGTGGAGCCATGGATTACGGCCCGGCCGATTCTTGAAGACATCTAC
AATTTTGAAGATGCGCTGTTGATCGGTTCACTGCTGATTACCATGCTGCAGCATGCGGACAGACTAAAGATCGCCTGTCT
CGCCCAGCTTGTCAACGTAATTGCGCCTATCATGACCGAAAAGGGCGGAGAAGCATGGAGGCAGCCGATCTTTTACCCTT
ACATGCACGCCTCTGTCTACGGGAGAGGGACTTCAATGAAGCTGCTGGTCACCTCCCCGAAATACGACTCAGCGGATTTT
ACGGATGTGCCGTATGTTGATGCCGCGGCCGTTTACCATGAAGAGGATGAAGCACTTACCATTTTTGCCGTCAACAAAAG
CAAGGAACTGATGGAAACGGAGATCAAGCTGAGAGGGTTTGAAGATTACCGCATTATTGAGCATATCGTGCTGGAGCATC
AGGATATGAAAGCGACCAATCAAAAAAACAGAAAAGAAGTCACGCCTCACTCAAACGGAACGTCTTCGGCAAATGCTGAA
GGGATAACGGCTCATTTTACTCCGCTGTCCTGGAATGTCATCCGTTTATCAGGCAAATAA

Upstream 100 bases:

>100_bases
GATACTGCCGGTGATCATCATATTCTTGTTTTTCCAAAAATACTTCATTTCCGGACTCACAGTAGGCGGAGTGAAGGGAT
AGAGAGAGGGAGGAAATATA

Downstream 100 bases:

>100_bases
TGTTCCGAAAAGCCGGGCTGCGCCGCCGGCTTTTTTTTACGCAAAAATCATCTCCTGTTATCTGATAATTGTGATAATAT
TTAGAAAAAGAGAAAAGGGG

Product: AbfA

Products: NA

Alternate protein names: Arabinosidase 1 [H]

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MKKAGITADKEYIIGEVDKRMYGSFIEHMGRAVYEGIYEPGHPKADKDGFRTDVQELIKELQVPFIRYPGGNFLSGYNWE
DGVGPVKDRPRRLDLAWQTTETNEVGTNEFLTWAKKVNAEVNMAVNLGTRGIDAARNLVEYCNHPEGSYWSDLRKSHGYE
KPYGIKTWCLGNEMDGPWQIGHKTAHEYGRLAAETAKVMKWTDPTIELVACGSSNSGMPSFIEWEAEVLEHTYEHVDYIS
LHTYYGNHENDLENYLAKSMDLDHFIKSVTAVCDYMKAKKRSKKTIHLSLDEWNVWYHSNEADKKVEPWITARPILEDIY
NFEDALLIGSLLITMLQHADRLKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYMHASVYGRGTSMKLLVTSPKYDSADF
TDVPYVDAAAVYHEEDEALTIFAVNKSKELMETEIKLRGFEDYRIIEHIVLEHQDMKATNQKNRKEVTPHSNGTSSANAE
GITAHFTPLSWNVIRLSGK

Sequences:

>Translated_499_residues
MKKAGITADKEYIIGEVDKRMYGSFIEHMGRAVYEGIYEPGHPKADKDGFRTDVQELIKELQVPFIRYPGGNFLSGYNWE
DGVGPVKDRPRRLDLAWQTTETNEVGTNEFLTWAKKVNAEVNMAVNLGTRGIDAARNLVEYCNHPEGSYWSDLRKSHGYE
KPYGIKTWCLGNEMDGPWQIGHKTAHEYGRLAAETAKVMKWTDPTIELVACGSSNSGMPSFIEWEAEVLEHTYEHVDYIS
LHTYYGNHENDLENYLAKSMDLDHFIKSVTAVCDYMKAKKRSKKTIHLSLDEWNVWYHSNEADKKVEPWITARPILEDIY
NFEDALLIGSLLITMLQHADRLKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYMHASVYGRGTSMKLLVTSPKYDSADF
TDVPYVDAAAVYHEEDEALTIFAVNKSKELMETEIKLRGFEDYRIIEHIVLEHQDMKATNQKNRKEVTPHSNGTSSANAE
GITAHFTPLSWNVIRLSGK
>Mature_499_residues
MKKAGITADKEYIIGEVDKRMYGSFIEHMGRAVYEGIYEPGHPKADKDGFRTDVQELIKELQVPFIRYPGGNFLSGYNWE
DGVGPVKDRPRRLDLAWQTTETNEVGTNEFLTWAKKVNAEVNMAVNLGTRGIDAARNLVEYCNHPEGSYWSDLRKSHGYE
KPYGIKTWCLGNEMDGPWQIGHKTAHEYGRLAAETAKVMKWTDPTIELVACGSSNSGMPSFIEWEAEVLEHTYEHVDYIS
LHTYYGNHENDLENYLAKSMDLDHFIKSVTAVCDYMKAKKRSKKTIHLSLDEWNVWYHSNEADKKVEPWITARPILEDIY
NFEDALLIGSLLITMLQHADRLKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYMHASVYGRGTSMKLLVTSPKYDSADF
TDVPYVDAAAVYHEEDEALTIFAVNKSKELMETEIKLRGFEDYRIIEHIVLEHQDMKATNQKNRKEVTPHSNGTSSANAE
GITAHFTPLSWNVIRLSGK

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 56906; Mature: 56906

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAGITADKEYIIGEVDKRMYGSFIEHMGRAVYEGIYEPGHPKADKDGFRTDVQELIKE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
LQVPFIRYPGGNFLSGYNWEDGVGPVKDRPRRLDLAWQTTETNEVGTNEFLTWAKKVNAE
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCE
VNMAVNLGTRGIDAARNLVEYCNHPEGSYWSDLRKSHGYEKPYGIKTWCLGNEMDGPWQI
EEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHH
GHKTAHEYGRLAAETAKVMKWTDPTIELVACGSSNSGMPSFIEWEAEVLEHTYEHVDYIS
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEE
LHTYYGNHENDLENYLAKSMDLDHFIKSVTAVCDYMKAKKRSKKTIHLSLDEWNVWYHSN
EEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECC
EADKKVEPWITARPILEDIYNFEDALLIGSLLITMLQHADRLKIACLAQLVNVIAPIMTE
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
KGGEAWRQPIFYPYMHASVYGRGTSMKLLVTSPKYDSADFTDVPYVDAAAVYHEEDEALT
CCCHHHHCCCCCHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHEEECCCCEEE
IFAVNKSKELMETEIKLRGFEDYRIIEHIVLEHQDMKATNQKNRKEVTPHSNGTSSANAE
EEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
GITAHFTPLSWNVIRLSGK
CEEEEECCCEEEEEEECCC
>Mature Secondary Structure
MKKAGITADKEYIIGEVDKRMYGSFIEHMGRAVYEGIYEPGHPKADKDGFRTDVQELIKE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
LQVPFIRYPGGNFLSGYNWEDGVGPVKDRPRRLDLAWQTTETNEVGTNEFLTWAKKVNAE
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCE
VNMAVNLGTRGIDAARNLVEYCNHPEGSYWSDLRKSHGYEKPYGIKTWCLGNEMDGPWQI
EEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHH
GHKTAHEYGRLAAETAKVMKWTDPTIELVACGSSNSGMPSFIEWEAEVLEHTYEHVDYIS
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEE
LHTYYGNHENDLENYLAKSMDLDHFIKSVTAVCDYMKAKKRSKKTIHLSLDEWNVWYHSN
EEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECC
EADKKVEPWITARPILEDIYNFEDALLIGSLLITMLQHADRLKIACLAQLVNVIAPIMTE
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
KGGEAWRQPIFYPYMHASVYGRGTSMKLLVTSPKYDSADFTDVPYVDAAAVYHEEDEALT
CCCHHHHCCCCCHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHEEECCCCEEE
IFAVNKSKELMETEIKLRGFEDYRIIEHIVLEHQDMKATNQKNRKEVTPHSNGTSSANAE
EEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
GITAHFTPLSWNVIRLSGK
CEEEEECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]