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The map label for this gene is ysgA [H]

Identifier: 154687000

GI number: 154687000

Start: 2694842

End: 2695588

Strand: Reverse

Name: ysgA [H]

Synonym: RBAM_025720

Alternate gene names: 154687000

Gene position: 2695588-2694842 (Counterclockwise)

Preceding gene: 154687005

Following gene: 154686999

Centisome position: 68.79

GC content: 52.34

Gene sequence:

>747_bases
GTGAAACGAATCGACTCTGCAAAAAACCAAAAAGTGAAGGACTGGAAAAAACTTCACACAAAAAAAGAGAGACTTAAAAC
GAATACATTTCTGATAGAAGGAGAGCATCTGGCAGAAGAAGCGCTCAAATCAAAGGGAACGGTAAAAGAAATTCTCGTAA
ACGATGAGAGCGCCATCCCGGCCGATCTGGACATGAGCATTCCGTGCTACGTGCTGAGCGAAGACGCGTTTTCAGCCGTG
ACGGAAACGGAAACGCCGCAGCGGATCGCCGCGGTCTGCCATATGCCGGATAAGCGGCCTGATCAGCTGAAGCGGCTGCT
TCTGATTGATGCCGTACAGGACCCGGGGAATTTAGGAACAATGATCAGAACGGCAGATGCCGCGGGAATCGACGCCGTTG
TCCTTGGTGAGGGAACAGCAGACCCGTACAACGGAAAAACGCTGCGTTCAGCACAAGGATCTCATTTTCATATTCCCATT
TTGAAACGTCCGCTTGATGAGTTTACCGCTGAGCTGAAATCACAAGGCGTCGCGATCTACGGCACGGCGCTTGAAAACGG
TGCGGCTTATCAAAGCGTGAAGCCTGAAGAATCGTTCGCGTTAATCGTCGGGAACGAGGGGGCGGGAGTGGACGCCGGCC
TTCTGCAAAAAACGGATCTCAACCTGTACGTTCCGCTGTACGGGCAGGCGGAATCGCTGAATGTGGCGGTAGCGGCCGCC
ATCCTCGTTTATCATCTCAGAGGATAG

Upstream 100 bases:

>100_bases
GAATGTGATACGCATATTCTTACCGCGCACGCGGTTTATTATGTGCTGTTCTTAAGATATAATAACAACATGCATGAAAA
AAGGAGAGCACAGACATAAA

Downstream 100 bases:

>100_bases
GTTGCGAAAAGCCTTGGATTTCACTATAATAGATAGCAATAATGTAAAAACCGTGACAGAGGACGTCAATTTTTGCACAC
ACTGCCTTCCAGGGAGAAAA

Product: YsgA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKEILVNDESAIPADLDMSIPCYVLSEDAFSAV
TETETPQRIAAVCHMPDKRPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPI
LKRPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAA
ILVYHLRG

Sequences:

>Translated_248_residues
MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKEILVNDESAIPADLDMSIPCYVLSEDAFSAV
TETETPQRIAAVCHMPDKRPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPI
LKRPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAA
ILVYHLRG
>Mature_248_residues
MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKEILVNDESAIPADLDMSIPCYVLSEDAFSAV
TETETPQRIAAVCHMPDKRPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPI
LKRPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAA
ILVYHLRG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=301, Percent_Identity=25.5813953488372, Blast_Score=74, Evalue=9e-14,
Organism=Escherichia coli, GI1790623, Length=141, Percent_Identity=34.0425531914894, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790083, Length=165, Percent_Identity=29.0909090909091, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26878; Mature: 26878

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKEILVNDESAIP
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCEEHEEECCCCCCC
ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVCHMPDKRPDQLKRLLLIDAVQDPGNLGT
CCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
MIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPILKRPLDEFTAELKSQGVAIY
EEEECCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEHHHHCCHHHHHHHHHHCCEEEE
GTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAA
EEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHH
ILVYHLRG
HHHHHCCC
>Mature Secondary Structure
MKRIDSAKNQKVKDWKKLHTKKERLKTNTFLIEGEHLAEEALKSKGTVKEILVNDESAIP
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCEEHEEECCCCCCC
ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVCHMPDKRPDQLKRLLLIDAVQDPGNLGT
CCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
MIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPILKRPLDEFTAELKSQGVAIY
EEEECCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEHHHHCCHHHHHHHHHHCCEEEE
GTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYVPLYGQAESLNVAVAAA
EEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHH
ILVYHLRG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]