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The map label for this gene is ysmB [H]

Identifier: 154686975

GI number: 154686975

Start: 2667517

End: 2667957

Strand: Reverse

Name: ysmB [H]

Synonym: RBAM_025470

Alternate gene names: 154686975

Gene position: 2667957-2667517 (Counterclockwise)

Preceding gene: 154686976

Following gene: 154686974

Centisome position: 68.08

GC content: 42.4

Gene sequence:

>441_bases
ATGACATCAAAATCTGTAGAGCATGTTGCGGATATCGAAAAATCACTCCGCCATATCGCTGCGATCATTAAACAAAAAGG
AAGAGAAATCCTTAACCAATATGCAATTACACCGCCGCAATTCGTGGGGCTTCAATGGCTTTATGAATTGGGGGATATGA
CAATAGGCGAATTATCAGGCAAAATGTATTTGGCTTGCAGCACGACGACGGATCTGATAGACCGCATGGAAAAAAATAAG
CTTGTCGAGCGGGTGAAAGACCCGGCTGACAGACGGGTCGTCAGAATTCATCTTCTCGCTGAAGGAGAGCGCATTATCCA
AGAAGTGATTTTGAAAAGACAGGCTTATTTGCGGGATATGTTTGCGACATTTTCCGAAGAAGAAACAGCCGCTTTCGAAA
AATCATTATTGAAACTGCAGCATGAAATGAAAAGAAAATGA

Upstream 100 bases:

>100_bases
TTTTCCTATTTTTCCGTCAGTCTTGCATTTTCTTAAAAAAAGAAGGAAAATAGACACGGAGCGCATAGCCCAGAAAGATC
CTTGAGTGAGGGATGGACAA

Downstream 100 bases:

>100_bases
GGCGATTTTGTTGGAACAGCCGATAGGAGTCATTGATTCCGGGGTTGGCGGGTTAACCGTTGCTAAGGAAATCATGAGAC
AGCTACCGAAGGAAAATATC

Product: YsmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTSKSVEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMEKNK
LVERVKDPADRRVVRIHLLAEGERIIQEVILKRQAYLRDMFATFSEEETAAFEKSLLKLQHEMKRK

Sequences:

>Translated_146_residues
MTSKSVEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMEKNK
LVERVKDPADRRVVRIHLLAEGERIIQEVILKRQAYLRDMFATFSEEETAAFEKSLLKLQHEMKRK
>Mature_145_residues
TSKSVEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMEKNKL
VERVKDPADRRVVRIHLLAEGERIIQEVILKRQAYLRDMFATFSEEETAAFEKSLLKLQHEMKRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16932; Mature: 16801

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKSVEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHCCC
KMYLACSTTTDLIDRMEKNKLVERVKDPADRRVVRIHLLAEGERIIQEVILKRQAYLRDM
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHEEHHHHHHCHHHHHHHHHHHHHHHHHHH
FATFSEEETAAFEKSLLKLQHEMKRK
HHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSKSVEHVADIEKSLRHIAAIIKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHCCC
KMYLACSTTTDLIDRMEKNKLVERVKDPADRRVVRIHLLAEGERIIQEVILKRQAYLRDM
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHEEHHHHHHCHHHHHHHHHHHHHHHHHHH
FATFSEEETAAFEKSLLKLQHEMKRK
HHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]