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The map label for this gene is radC [C]

Identifier: 154686939

GI number: 154686939

Start: 2626312

End: 2627007

Strand: Reverse

Name: radC [C]

Synonym: RBAM_025090

Alternate gene names: 154686939

Gene position: 2627007-2626312 (Counterclockwise)

Preceding gene: 154686940

Following gene: 154686938

Centisome position: 67.04

GC content: 48.13

Gene sequence:

>696_bases
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Upstream 100 bases:

>100_bases
TATTCTGTCGTCGGGCTTCCTGTCGCTAAAACAATGAGAGCCTTGAAAGAATTTAATATAAAAGCTTGATGTTCAAACCG
GGAAGGGGAACAAGGAGGGG

Downstream 100 bases:

>100_bases
CACTTTTTTTTTCGTTGATTTAAGATATAATAGATTTTATGAGTTTTTCCCTTTAGGGTATTTTTGCTTTAAGAAAGGAA
GATACATACATATGTTCGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Sequences:

>Translated_231_residues
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
>Mature_231_residues
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=36.150234741784, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=43.3333333333333, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788312, Length=114, Percent_Identity=42.1052631578947, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI2367100, Length=108, Percent_Identity=44.4444444444444, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2509_BACA2 (A7Z793)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001422100.1
- ProteinModelPortal:   A7Z793
- SMR:   A7Z793
- STRING:   A7Z793
- EnsemblBacteria:   EBBACT00000004811
- GeneID:   5459507
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_025090
- eggNOG:   COG2003
- GeneTree:   EBGT00050000002627
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   BAMY326423:RBAM_025090-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 26081; Mature: 26081

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRT
CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
FDGLRLLKGASAQELSSIPGIGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYV
HHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
MEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFKRSAASFICVH
HHHHHHHCCCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEE
NHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEEHHCCCCC
>Mature Secondary Structure
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRT
CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
FDGLRLLKGASAQELSSIPGIGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYV
HHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
MEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFKRSAASFICVH
HHHHHHHCCCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEE
NHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA