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The map label for this gene is yrrB [H]

Identifier: 154686890

GI number: 154686890

Start: 2579339

End: 2579989

Strand: Reverse

Name: yrrB [H]

Synonym: RBAM_024600

Alternate gene names: 154686890

Gene position: 2579989-2579339 (Counterclockwise)

Preceding gene: 154686891

Following gene: 154686889

Centisome position: 65.84

GC content: 48.23

Gene sequence:

>651_bases
ATGGATTATAATAAAATCGGGATTGACGCCATGCAGGAGGGCGATTTTGAAAAAGCGGCAGAGGCTTTTACGAAAGCGAT
TGAGGAAAACGGGCAAGATCCGGTGCCGTATATCAACTTCGCAAATCTGCTTTCTTCTGTGAACGAACTCGAACGGGCGC
TTGCATTCTATAACAGAGCGCTTGAATTGGACAATTCGGCGGCAGCCGCTTATTACGGTGCGGGAAACGTATATGTGATG
AAAGAATCGTTTTCCGAAGCGAAGGATATGTTTGAAAAAGCGCTTCGCTCCGGAATGGAAAACGGAGATTTGTTTTATAT
GCTGGGGACCGTTCTCGTTAAATTAGAGCGGCCGAAGCTTGCACTGCCATATTTGCAGCGTGCCGTTGAATTAAACGAAA
ATGACACGGAAGCACGCTTCCAGTTCGGAATGTGCCTCGCAAATGAAGAAATGCTGGATGAAGCTCTGGCGCAGTTTGAG
ACGGTGATCGAGCAGGACCCAAGCCACGCGGACGCATTTTATAATGCCGGGGTCGCTTACGCGTACAAAGAAAATCGTGA
AAAGGCGCTTGAGATGCTGGAAGGCGCAATCGGCATACAGCCTGATCATATGCTTGCGCTTCATGCGAAACAGCTTATCA
CCCAGTCATAA

Upstream 100 bases:

>100_bases
AGATGACGTTTATAAAGACGGAACAAAACTGTGGTACGTATAACACATGTAAAAAACCTCAACTCGCATGTTGGGGTTTT
TTAGCGAAAGGAAGTTAAAA

Downstream 100 bases:

>100_bases
CAAAAGGAGGGAAGGCTCGTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTA
TCACAATGACACCAACCTGT

Product: YrrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MDYNKIGIDAMQEGDFEKAAEAFTKAIEENGQDPVPYINFANLLSSVNELERALAFYNRALELDNSAAAAYYGAGNVYVM
KESFSEAKDMFEKALRSGMENGDLFYMLGTVLVKLERPKLALPYLQRAVELNENDTEARFQFGMCLANEEMLDEALAQFE
TVIEQDPSHADAFYNAGVAYAYKENREKALEMLEGAIGIQPDHMLALHAKQLITQS

Sequences:

>Translated_216_residues
MDYNKIGIDAMQEGDFEKAAEAFTKAIEENGQDPVPYINFANLLSSVNELERALAFYNRALELDNSAAAAYYGAGNVYVM
KESFSEAKDMFEKALRSGMENGDLFYMLGTVLVKLERPKLALPYLQRAVELNENDTEARFQFGMCLANEEMLDEALAQFE
TVIEQDPSHADAFYNAGVAYAYKENREKALEMLEGAIGIQPDHMLALHAKQLITQS
>Mature_216_residues
MDYNKIGIDAMQEGDFEKAAEAFTKAIEENGQDPVPYINFANLLSSVNELERALAFYNRALELDNSAAAAYYGAGNVYVM
KESFSEAKDMFEKALRSGMENGDLFYMLGTVLVKLERPKLALPYLQRAVELNENDTEARFQFGMCLANEEMLDEALAQFE
TVIEQDPSHADAFYNAGVAYAYKENREKALEMLEGAIGIQPDHMLALHAKQLITQS

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI224809432, Length=175, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24656717, Length=170, Percent_Identity=24.7058823529412, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI18110006, Length=170, Percent_Identity=24.7058823529412, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 24194; Mature: 24194

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYNKIGIDAMQEGDFEKAAEAFTKAIEENGQDPVPYINFANLLSSVNELERALAFYNRA
CCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LELDNSAAAAYYGAGNVYVMKESFSEAKDMFEKALRSGMENGDLFYMLGTVLVKLERPKL
HHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
ALPYLQRAVELNENDTEARFQFGMCLANEEMLDEALAQFETVIEQDPSHADAFYNAGVAY
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
AYKENREKALEMLEGAIGIQPDHMLALHAKQLITQS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYNKIGIDAMQEGDFEKAAEAFTKAIEENGQDPVPYINFANLLSSVNELERALAFYNRA
CCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LELDNSAAAAYYGAGNVYVMKESFSEAKDMFEKALRSGMENGDLFYMLGTVLVKLERPKL
HHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
ALPYLQRAVELNENDTEARFQFGMCLANEEMLDEALAQFETVIEQDPSHADAFYNAGVAY
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
AYKENREKALEMLEGAIGIQPDHMLALHAKQLITQS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]