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The map label for this gene is yrrN [H]

Identifier: 154686875

GI number: 154686875

Start: 2564751

End: 2565680

Strand: Reverse

Name: yrrN [H]

Synonym: RBAM_024450

Alternate gene names: 154686875

Gene position: 2565680-2564751 (Counterclockwise)

Preceding gene: 154686876

Following gene: 154686874

Centisome position: 65.47

GC content: 46.99

Gene sequence:

>930_bases
ATGAAAAAACCTGAACTTTTGGTGACTCCGACTTCTGTACAGGATATTCTTCCGCTCATTCAAGCGGGCGCAACGGCCCT
GTTAGTCGGAGAACAGAGAAACGGCCTGAGACTGGCCGGTGAATTTTCAAGAGAAGATATAAAAGAAGCCGTAAAGACAG
CTCATCAGGAAGGCGCGAAAGTGTACGCCGCCGTCAATGCTATTTTTCACAACGAAAAAGTGGACGAGCTGAACGGCTAT
CTTGCCTTTTTGCAGGAGGCCGGCGTTGATGCGGCTGTTTTCGGTGATCCGGCCGTTTTAATGGCGGCGCGTGAAGCGGC
TCCCGAGCTTAAACTGCATTGGAGCACGGAAACAACGGGAACCAACTACTATTCCTGCAATTACTGGGGACGCAAAGGCG
CACGGCGGGCAGTGCTGGCTAAGGAATTAAATATGGACAGCATCATTGACATAAAAGAAAACGCCGAAGTGGAAATTGAA
ATTCAAATCCACGGCATGACGTGCATGTTCCAATCGAAGCGTTCTTTAGTGGGCCATTACTTCGAATACCAAGGTAAAGT
CATGGACATCGAACAGAAGAAAAAAGAAGCGGGGATGTTTCTGCATGACAAGGAACGGGGCAATAAATACCCGATTTTTG
AAGATGAAAACGGCACGCACATCATGAGCCCGAACGATGTGTGCATGATTGATGAATTAGAGGACCTGATGGACGCCGGC
ATCGATTCTTTCAAAATCGACGGAGTTTTGAAGTCTCCTGAATACTTAACTGAAGTGACCCGCATGTACAGAGAAGCAAT
CGATTTGTGCTTCGAAAGCCGAGAGACATACGAAGAGAAAAAAGAGAGCTGGATAGAGCGGATTGAAAGCATTCAGCCTG
TGAACAGAAGCATCGATACAGGATTCTTCTTTAAAGAAACGGTCTATTAA

Upstream 100 bases:

>100_bases
TCAATATAACCAATGGCTGATGGACCGGCCTGACTATCAAACGGTCATACTGCCGGTCGGAGACGGCATCGCCATCAGTA
AAAAGAAGAGGTGAAGGATC

Downstream 100 bases:

>100_bases
AAAGGAGGGTGCAACGGATGACAGCCGTAAATCAAACCATTTCCAAAGTCGTAAACGGAAAACGCGTCATTACGAAAAAA
CCTGAACTCCTTGCTCCGGC

Product: YrrN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKKPELLVTPTSVQDILPLIQAGATALLVGEQRNGLRLAGEFSREDIKEAVKTAHQEGAKVYAAVNAIFHNEKVDELNGY
LAFLQEAGVDAAVFGDPAVLMAAREAAPELKLHWSTETTGTNYYSCNYWGRKGARRAVLAKELNMDSIIDIKENAEVEIE
IQIHGMTCMFQSKRSLVGHYFEYQGKVMDIEQKKKEAGMFLHDKERGNKYPIFEDENGTHIMSPNDVCMIDELEDLMDAG
IDSFKIDGVLKSPEYLTEVTRMYREAIDLCFESRETYEEKKESWIERIESIQPVNRSIDTGFFFKETVY

Sequences:

>Translated_309_residues
MKKPELLVTPTSVQDILPLIQAGATALLVGEQRNGLRLAGEFSREDIKEAVKTAHQEGAKVYAAVNAIFHNEKVDELNGY
LAFLQEAGVDAAVFGDPAVLMAAREAAPELKLHWSTETTGTNYYSCNYWGRKGARRAVLAKELNMDSIIDIKENAEVEIE
IQIHGMTCMFQSKRSLVGHYFEYQGKVMDIEQKKKEAGMFLHDKERGNKYPIFEDENGTHIMSPNDVCMIDELEDLMDAG
IDSFKIDGVLKSPEYLTEVTRMYREAIDLCFESRETYEEKKESWIERIESIQPVNRSIDTGFFFKETVY
>Mature_309_residues
MKKPELLVTPTSVQDILPLIQAGATALLVGEQRNGLRLAGEFSREDIKEAVKTAHQEGAKVYAAVNAIFHNEKVDELNGY
LAFLQEAGVDAAVFGDPAVLMAAREAAPELKLHWSTETTGTNYYSCNYWGRKGARRAVLAKELNMDSIIDIKENAEVEIE
IQIHGMTCMFQSKRSLVGHYFEYQGKVMDIEQKKKEAGMFLHDKERGNKYPIFEDENGTHIMSPNDVCMIDELEDLMDAG
IDSFKIDGVLKSPEYLTEVTRMYREAIDLCFESRETYEEKKESWIERIESIQPVNRSIDTGFFFKETVY

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=349, Percent_Identity=28.9398280802292, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87081910, Length=262, Percent_Identity=29.3893129770992, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789548, Length=315, Percent_Identity=23.4920634920635, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 35102; Mature: 35102

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPELLVTPTSVQDILPLIQAGATALLVGEQRNGLRLAGEFSREDIKEAVKTAHQEGAK
CCCCCEEEECCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCH
VYAAVNAIFHNEKVDELNGYLAFLQEAGVDAAVFGDPAVLMAAREAAPELKLHWSTETTG
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCC
TNYYSCNYWGRKGARRAVLAKELNMDSIIDIKENAEVEIEIQIHGMTCMFQSKRSLVGHY
CCEEEECCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEEEEECEEEEEHHHHHHHHHH
FEYQGKVMDIEQKKKEAGMFLHDKERGNKYPIFEDENGTHIMSPNDVCMIDELEDLMDAG
HHHCCCEECHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEECCCCEEEHHHHHHHHHCC
IDSFKIDGVLKSPEYLTEVTRMYREAIDLCFESRETYEEKKESWIERIESIQPVNRSIDT
CCCEEECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GFFFKETVY
CEEEEECCC
>Mature Secondary Structure
MKKPELLVTPTSVQDILPLIQAGATALLVGEQRNGLRLAGEFSREDIKEAVKTAHQEGAK
CCCCCEEEECCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCH
VYAAVNAIFHNEKVDELNGYLAFLQEAGVDAAVFGDPAVLMAAREAAPELKLHWSTETTG
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCC
TNYYSCNYWGRKGARRAVLAKELNMDSIIDIKENAEVEIEIQIHGMTCMFQSKRSLVGHY
CCEEEECCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEEEEECEEEEEHHHHHHHHHH
FEYQGKVMDIEQKKKEAGMFLHDKERGNKYPIFEDENGTHIMSPNDVCMIDELEDLMDAG
HHHCCCEECHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEECCCCEEEHHHHHHHHHCC
IDSFKIDGVLKSPEYLTEVTRMYREAIDLCFESRETYEEKKESWIERIESIQPVNRSIDT
CCCEEECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GFFFKETVY
CEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]